https://github.com/sciencegenome/bedtools-multipangenome
rust bedtools multi-pangenome call
https://github.com/sciencegenome/bedtools-multipangenome
algorithm-bioinformatics bedtools genome-analysis metagenomics pangenome pangenome-alignment rust-lang
Last synced: 2 months ago
JSON representation
rust bedtools multi-pangenome call
- Host: GitHub
- URL: https://github.com/sciencegenome/bedtools-multipangenome
- Owner: sciencegenome
- License: mit
- Created: 2025-01-06T19:23:57.000Z (4 months ago)
- Default Branch: main
- Last Pushed: 2025-01-15T20:56:32.000Z (4 months ago)
- Last Synced: 2025-01-17T09:12:22.165Z (4 months ago)
- Topics: algorithm-bioinformatics, bedtools, genome-analysis, metagenomics, pangenome, pangenome-alignment, rust-lang
- Language: Rust
- Homepage:
- Size: 3.6 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# rust-bedtools-multipangenome
- rust bedtools multi-pangenome.
- analyzes the multiple pangenome alignments of the same query to the multiple reference genomes
- limits the longest alignment search to the longest alignment.
- build a ancestral sequence based on the longest alignment.
- please see the last commit message and if it says compiled binary then it is completed or else still in development version.
```
cargo build
```
```
Usage: rust-bedtools-multipangenome
Arguments:
please provide the path to the first alignment file
please provide the reference fasta file
please provide the path to the prank for the ancestal state
Options:
-h, --help Print help
-V, --version Print version
```
- to run the binary
```
./rust-bedtools-multipangenome \
./sample-files/sample.bed \
./sample-files/sample.fasta \
./prank \
```
Gaurav Sablok