https://github.com/scverse/genomic-features
Genomic Features in Python from BioConductor's AnnotationHub
https://github.com/scverse/genomic-features
genomics python
Last synced: 11 months ago
JSON representation
Genomic Features in Python from BioConductor's AnnotationHub
- Host: GitHub
- URL: https://github.com/scverse/genomic-features
- Owner: scverse
- License: bsd-3-clause
- Created: 2023-04-24T09:57:22.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2025-06-23T17:35:53.000Z (12 months ago)
- Last Synced: 2025-06-23T18:40:05.179Z (12 months ago)
- Topics: genomics, python
- Language: Python
- Homepage: https://genomic-features.readthedocs.io
- Size: 5.56 MB
- Stars: 22
- Watchers: 4
- Forks: 5
- Open Issues: 27
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: docs/contributing.md
- License: LICENSE
Awesome Lists containing this project
README
# genomic-features
[![Tests][badge-tests]][link-tests]
[![Documentation][badge-docs]][link-docs]
[](https://codecov.io/gh/scverse/genomic-features)
[![PyPI][badge-pypi]][link-pypi]
[badge-tests]: https://img.shields.io/github/actions/workflow/status/scverse/genomic-features/test.yaml?branch=main
[link-tests]: https://github.com/scverse/genomic-features/actions/workflows/test.yml
[badge-docs]: https://img.shields.io/readthedocs/genomic-features
[badge-pypi]: https://img.shields.io/pypi/v/genomic-features
[link-pypi]: https://pypi.org/project/genomic-features
Genomic annotations using BioConductor resources in Python.
## Getting started
Check out the [documentation][link-docs], in particular the [basic tutorial][link-basic-usage] and [API docs][link-api].
## Installation
You need to have Python 3.9 or newer installed on your system. If you don't have
Python installed, we recommend installing [Mambaforge](https://github.com/conda-forge/miniforge#mambaforge).
There are several alternative options to install genomic-features:
### Development install
To install the latest development version:
```bash
pip install git+https://github.com/scverse/genomic-features.git@main
```
## Release notes
See the [changelog][changelog].
## Contact
For questions and help requests, you can reach out in the [scverse discourse][scverse-discourse].
If you found a bug, please use the [issue tracker][issue-tracker].
## Citation
> t.b.a
[scverse-discourse]: https://discourse.scverse.org/
[issue-tracker]: https://github.com/scverse/genomic-features/issues
[changelog]: https://genomic-features.readthedocs.io/en/latest/changelog.html
[link-docs]: https://genomic-features.readthedocs.io
[link-api]: https://genomic-features.readthedocs.io/en/latest/api.html
[link-basic-usage]: https://genomic-features.readthedocs.io/en/latest/notebooks/basic_usage.html
[//]: # (numfocus-fiscal-sponsor-attribution)
genomic-features is part of the scverse® project ([website](https://scverse.org), [governance](https://scverse.org/about/roles)) and is fiscally sponsored by [NumFOCUS](https://numfocus.org/).
If you like scverse® and want to support our mission, please consider making a tax-deductible [donation](https://numfocus.org/donate-to-scverse) to help the project pay for developer time, professional services, travel, workshops, and a variety of other needs.
