https://github.com/seandavi/geoquery
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
https://github.com/seandavi/geoquery
bioconductor bioinformatics data-science genomics ncbi-geo r rstats
Last synced: about 1 year ago
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The bridge between the NCBI Gene Expression Omnibus and Bioconductor
- Host: GitHub
- URL: https://github.com/seandavi/geoquery
- Owner: seandavi
- License: mit
- Created: 2013-07-19T06:44:10.000Z (almost 13 years ago)
- Default Branch: main
- Last Pushed: 2023-11-21T21:50:32.000Z (over 2 years ago)
- Last Synced: 2024-05-15T17:31:48.940Z (about 2 years ago)
- Topics: bioconductor, bioinformatics, data-science, genomics, ncbi-geo, r, rstats
- Language: R
- Homepage: http://seandavi.github.io/GEOquery
- Size: 19.1 MB
- Stars: 82
- Watchers: 6
- Forks: 34
- Open Issues: 18
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
Awesome Lists containing this project
README
## Status
[](https://github.com/seandavi/GEOquery/actions)
[](https://bioconductor.org/packages/GEOquery)
[](https://bioconductor.org/packages/GEOquery)
[](https://github.com/seandavi/GEOquery/actions/workflows/R-CMD-check.yaml)
## Installation
To install from Bioconductor, use the following code:
```
# if needed, install BiocManager
install.packages("BiocManager")
# install GEOquery
BiocManager::install("GEOquery")
```
To install directly from github:
```
BiocManager::install('seandavi/GEOquery')
```
## Usage
See the full vignette in [rmarkdown](https://github.com/seandavi/GEOquery/blob/master/vignettes/GEOquery.Rmd) or visit Bioconductor for details:
- [Release version](http://www.bioconductor.org/packages/release/bioc/html/GEOquery.html)
- [Devel version](http://www.bioconductor.org/packages/devel/bioc/html/GEOquery.html)
## How to contribute
Contributions to GEOquery development can be submitted as a [pull request](https://github.com/seandavi/GEOquery/pulls) or a [feature request issue](https://github.com/seandavi/GEOquery/issues). We recommend following the [Bioconductor coding standards](https://contributions.bioconductor.org/r-code.html) where possible.