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https://github.com/servierhub/top-pharma-fr

Top open source software from French pharmaceutical companies
https://github.com/servierhub/top-pharma-fr
ai awesome awesome-list awesome-lists bioinformatics biology-ai computational-biology computational-chemistry ebiology france french life-sciences lifescience lifesciences pharma pharmaceuticals servier
Last synced: 3 months ago
JSON representation
Top open source software from French pharmaceutical companies
Host: GitHub
URL: https://github.com/servierhub/top-pharma-fr
Owner: servierhub
Created: 2024-05-20T01:35:13.000Z (7 months ago)
Default Branch: main
Last Pushed: 2024-06-09T21:01:52.000Z (6 months ago)
Last Synced: 2024-09-21T18:34:22.884Z (3 months ago)
Topics: ai, awesome, awesome-list, awesome-lists, bioinformatics, biology-ai, computational-biology, computational-chemistry, ebiology, france, french, life-sciences, lifescience, lifesciences, pharma, pharmaceuticals, servier
Language: Makefile
Homepage:
Size: 110 KB
Stars: 1
Watchers: 2
Forks: 0
Open Issues: 0
Metadata Files:
- Readme: README.md
Awesome Lists containing this project

ultimate-awesome - top-pharma-fr - Top open source software from French pharmaceutical companies. (Other Lists / PowerShell Lists)
README

        

[![Servier Contributed](https://raw.githubusercontent.com/servierhub/.github/main/badges/contributed.svg)](https://github.com/ServierHub/)

# Top open source software from French pharmaceutical companies

This is an automatically generated[^1] list of [open source](https://opensource.org/osd) software from [French pharmaceutical companies](https://fr.wikipedia.org/wiki/Cat%C3%A9gorie:Entreprise_pharmaceutique_ayant_son_si%C3%A8ge_en_France)[^2] that are present on GitHub.

It will be periodically refreshed from these [GitHub accounts](Results/SOURCES.md) repositories.

You can also access [what they have updated lately](Results/NEW.md),

and [which topics are covered](Results/TOPICS.md) by these software.

## Ranked by starred repositories

> [!NOTE]

>  **stars** - number of people who especially appreciated the repository


>  **forks** - number of people who have cloned the repository in order to modify it


>  **watchers** - number of people who are monitoring changes in the repository


>  **main programming language**


>  **license**


>  **last update date & time**


|Rank|Software|

|---|:---|

|1|[**Sanofi-Public/CodonBERT**](https://github.com/Sanofi-Public/CodonBERT)
Repository for mRNA Paper and CodonBERT publication.
 94  14  Python  Other  2024-05-03 19:24:06 |

|2|[**Sanofi-IADC/whispr**](https://github.com/Sanofi-IADC/whispr)
Open source event, comment and alert processing hub created by Sanofi IADC
 88  8  TypeScript  MIT License  2024-06-04 12:01:03 |

|3|[**Sanofi-IADC/konviw**](https://github.com/Sanofi-IADC/konviw)
Enterprise public viewer for your Confluence pages
`cms`, `confluence`, `headless-cms`, `viewer`
 31  8  TypeScript  MIT License  2024-06-07 09:22:49 |

|4|[**Sanofi-Public/emrflow**](https://github.com/Sanofi-Public/emrflow)
EMRFlow is designed to simplify the process of running PySpark jobs on Amazon EMR (Elastic Map Reduce).
 14  Python  Apache License 2.0  2024-04-25 20:02:00 |

|5|[**Sanofi-Public/LMR-SurfaceID**](https://github.com/Sanofi-Public/LMR-SurfaceID)
Repo contains source code of the SurfaceID paper
`apm-0074337`, `cc-6cl900`
 13  4  Python  Other  2024-03-13 16:06:41 |

|6|[**Sanofi-Public/IDD-papers-generative-applicability-domains**](https://github.com/Sanofi-Public/IDD-papers-generative-applicability-domains)
Repository for the code associated with the paper Impact of applicability domains by Maxime Langevin et al.
`cc-f40ccl2041`
 11  4  Jupyter Notebook  2023-07-11 10:29:55 |

|7|[**Guerbet-AI/wsp-contrastive**](https://github.com/Guerbet-AI/wsp-contrastive)
Official implementation of "Weakly-supervised positional contrastive learning: application to cirrhosis classification", MICCAI 2023
 10  2  Python  2023-08-30 13:51:58 |

|8|[**Sanofi-Public/Alien**](https://github.com/Sanofi-Public/Alien)
 8  2  Jupyter Notebook  Other  2023-10-20 17:40:14 |

|8|[**Sanofi-Public/IDD-papers-fragrl**](https://github.com/Sanofi-Public/IDD-papers-fragrl)
Repo for fragrl code for publication
 8  5  Python  2023-09-06 07:37:39 |

|9|[**Sanofi-Public/PMCB-ToBridge**](https://github.com/Sanofi-Public/PMCB-ToBridge)
PMCB-SCB scRNA-seq pipeline
 6  1  Python  2024-04-08 18:53:02 |

|9|[**Sanofi-IADC/glisten**](https://github.com/Sanofi-IADC/glisten)
Feedback component plugin for whispr
`dashboard-component`, `feedbacks`
 6  5  Vue  MIT License  2024-06-03 19:13:23 |

|10|[**Sanofi-Public/IDD-Papers-AI4DR**](https://github.com/Sanofi-Public/IDD-Papers-AI4DR)
Repository for the code associated with the paper 'AI4DR: Development and Implementation of an Annotation System for High-Throughput Dose-Response Experiments'
 4  Jupyter Notebook  Other  2022-12-19 10:42:03 |

|10|[**Sanofi-IADC/konflu-cli**](https://github.com/Sanofi-IADC/konflu-cli)
Martial Arts for Confluence automation
`command-line`, `confluence`
 4  1  TypeScript  MIT License  2023-12-15 08:17:50 |

|11|[**Sanofi-Public/LipoBART**](https://github.com/Sanofi-Public/LipoBART)
 3  Jupyter Notebook  Other  2024-06-06 13:50:10 |

|11|[**Sanofi-Public/spatialone-pipeline**](https://github.com/Sanofi-Public/spatialone-pipeline)
Spatial One
`bioinformatics`, `python`, `spatial-biology`, `spatialomics`
 3  Python  Other  2024-05-13 15:43:29 |

|11|[**fondationmerieux/labbook_python**](https://github.com/fondationmerieux/labbook_python)
LabBook Python
 3  2  Python  GNU General Public License v2.0  2024-05-16 10:16:46 |

|12|[**Sanofi-Public/PMCB-CellBridge**](https://github.com/Sanofi-Public/PMCB-CellBridge)
PMCB-SCB scRNA-seq pipeline
 2  HTML  2024-05-13 15:42:39 |

|12|[**Sanofi-Public/RWD-Proxy-Endpoint-Models**](https://github.com/Sanofi-Public/RWD-Proxy-Endpoint-Models)
 2  Jupyter Notebook  Other  2024-04-03 10:22:25 |

|12|[**Sanofi-Public/indication-finding**](https://github.com/Sanofi-Public/indication-finding)
Repository for "Comparing Methods for Identifying Novel Indications of Drugs using Electronic Health Records" publication
 2  Python  Other  2024-01-26 20:59:59 |

|12|[**Sanofi-Public/DDS-RoFormerMIL**](https://github.com/Sanofi-Public/DDS-RoFormerMIL)
 2  1  Python  Other  2023-11-13 15:53:20 |

|12|[**Sanofi-Public/IDD-papers-avoiding_failure_modes**](https://github.com/Sanofi-Public/IDD-papers-avoiding_failure_modes)
Repository for the code associated with the paper Avoiding Failure Modes by Maxime Langevin et al.
 2  4  Jupyter Notebook  Other  2021-11-18 17:28:44 |

|12|[**Sanofi-IADC/jival**](https://github.com/Sanofi-IADC/jival)
Validation and health check tool for Jira configurations
 2  1  TypeScript  2023-12-15 17:40:02 |

|12|[**Boiron/BoironMedicineFinder2020**](https://github.com/Boiron/BoironMedicineFinder2020)
This is the source code for the medicine finder in the year 2020
 2  2  JavaScript  2022-12-10 17:18:52 |

|13|[**Sanofi-Public/crai**](https://github.com/Sanofi-Public/crai)
 1  Python  2024-05-31 17:21:37 |

|13|[**Sanofi-Public/IDD-Collective-Intelligence**](https://github.com/Sanofi-Public/IDD-Collective-Intelligence)
 1  Jupyter Notebook  Other  2024-05-03 20:02:43 |

|13|[**Sanofi-Public/PMCB-Genix**](https://github.com/Sanofi-Public/PMCB-Genix)
Gene Expression Network Importance eXamination
 1  1  R  2023-12-24 21:44:27 |

|13|[**servierhub/top-life-sciences**](https://github.com/servierhub/top-life-sciences)
Top Life Sciences open-source software
`ai`, `awesome`, `awesome-list`, `awesome-lists`, `bioinformatics`, `biology`, `biology-ai`, `computational-biology`, `computational-chemistry`, `ebiology`, `life-sciences`, `lifescience`, `lifesciences`, `pharma`, `pharmaceuticals`, `servier`
 1  2024-06-06 07:56:59 |

|13|[**servierhub/top-pharma50**](https://github.com/servierhub/top-pharma50)
Top open source software from the top 50 pharmaceutical companies
`ai`, `awesome`, `awesome-list`, `awesome-lists`, `bioinformatics`, `biology-ai`, `computational-biology`, `computational-chemistry`, `ebiology`, `life-sciences`, `lifescience`, `lifesciences`, `pharma`, `pharmaceuticals`, `servier`
 1  2024-06-01 15:52:09 |

|13|[**servierhub/top-pharma-fr**](https://github.com/servierhub/top-pharma-fr)
Top open source software from French pharmaceutical companies
`ai`, `awesome`, `awesome-list`, `awesome-lists`, `bioinformatics`, `biology-ai`, `computational-biology`, `computational-chemistry`, `ebiology`, `france`, `french`, `life-sciences`, `lifescience`, `lifesciences`, `pharma`, `pharmaceuticals`, `servier`
 1  2024-06-01 15:09:59 |

|13|[**servierhub/top-prisme**](https://github.com/servierhub/top-prisme)
PRISME Forum members on GitHub
`awesome`, `awesome-list`, `awesome-lists`, `biotechnology`, `pharma`, `pharmaceuticals`, `servier`
 1  2024-06-01 14:54:07 |

|13|[**servierhub/prose**](https://github.com/servierhub/prose)
Bring the power of gen-ai to the CI/CD
`assistant-cli`, `cicd`, `documentation`, `gen-ai`, `servier`, `test-automation`
 1  Python  GNU General Public License v3.0  2024-03-14 01:39:11 |

|13|[**Boiron/boironMedFinder**](https://github.com/Boiron/boironMedFinder)
Boiron Medicine Finder made with Angular JS \| Ionic Framework \| Ionic Creator
 1  2  JavaScript  2022-12-09 10:23:13 |

|13|[**Boiron/coupons-new**](https://github.com/Boiron/coupons-new)
 1  PHP  2014-12-08 20:21:55 |

|14|[**Sanofi-Public/RDCS-bulkRNASeq-pseudo_ordering**](https://github.com/Sanofi-Public/RDCS-bulkRNASeq-pseudo_ordering)
 Jupyter Notebook  Other  2024-06-07 15:54:19 |

|14|[**Sanofi-Public/PMCB-SignacX**](https://github.com/Sanofi-Public/PMCB-SignacX)
Annotation of single-cell data
`cc-us03b0096`
 2  HTML  GNU General Public License v3.0  2024-05-23 20:00:43 |

|14|[**Sanofi-Public/CrossAttOmics**](https://github.com/Sanofi-Public/CrossAttOmics)
 Python  Other  2024-04-15 07:10:03 |

|14|[**Sanofi-Public/eLNNpairedCov**](https://github.com/Sanofi-Public/eLNNpairedCov)
An R package to detect differentially expressed genes based on data from paired design
 1  R  2024-01-11 14:11:21 |

|14|[**Sanofi-Public/PMCB-Sargent**](https://github.com/Sanofi-Public/PMCB-Sargent)
Github repository for Sargent R package
`cc-us03b0096`
 R  2023-11-28 20:29:03 |

|14|[**Sanofi-IADC/konviw-slides**](https://github.com/Sanofi-IADC/konviw-slides)
 1  JavaScript  Apache License 2.0  2024-03-14 15:01:25 |

|14|[**Sanofi-IADC/passport-multi-jwt**](https://github.com/Sanofi-IADC/passport-multi-jwt) (forked from: [MeStrak/passport-jwt](https://github.com/MeStrak/passport-jwt))
Passport authentication using JSON Web Tokens
 JavaScript  MIT license  2023-04-04 01:14:32 |

|14|[**Sanofi-IADC/macro-connect**](https://github.com/Sanofi-IADC/macro-connect)
Test static macro-connect
 HTML  2022-11-02 21:48:40 |

|14|[**PS111761/Policy-Sanofi**](https://github.com/PS111761/Policy-Sanofi)
ServiceNow Policy & Compliance configuration & Customization
`apm-0070143`
 2022-09-21 11:28:25 |

|14|[**PS111761/Foundation-Sanofi**](https://github.com/PS111761/Foundation-Sanofi)
ServiceNow Foundation configuration & Customization
`apm-0007239`
 2022-08-23 15:51:12 |

|14|[**PS111761/ITSM-Sanofi**](https://github.com/PS111761/ITSM-Sanofi)
ServiceNow Cross Process ITSM Management configuration & Customization
`apm-0007239`
 2022-08-23 15:49:30 |

|14|[**PS111761/Change-Sanofi**](https://github.com/PS111761/Change-Sanofi)
ServiceNow Change Management configuration & Customization
`apm-0007239`
 2022-08-23 15:46:34 |

|14|[**Sanofi-ECCS-DevOps/terraform-azurerm-caf**](https://github.com/Sanofi-ECCS-DevOps/terraform-azurerm-caf) (forked from: [Sanofi-GitHub/cloudfoundations-azurelandingzone-caf_tf_module](https://github.com/Sanofi-GitHub/cloudfoundations-azurelandingzone-caf_tf_module))
Base terraform module for the landing zones on Terraform part of Microsoft Cloud Adoption Framework for Azure
 HCL  MIT license  2023-08-09 13:37:04 |

|14|[**Sanofi-ECCS-DevOps/actions-at-scale-ghoh1**](https://github.com/Sanofi-ECCS-DevOps/actions-at-scale-ghoh1) (forked from: [Link-/actions-at-scale-ghoh](https://github.com/Link-/actions-at-scale-ghoh))
GitHub Office Hours - Adopting GitHub Actions at scale in the Enterprise
 Dockerfile  MIT license  2022-02-12 10:13:31 |

|14|[**Sanofi-GitHub/cloudfoundations-azurelandingzone-caf_tf_module**](https://github.com/Sanofi-GitHub/cloudfoundations-azurelandingzone-caf_tf_module) (forked from: [Mobizinc/terraform-azurerm-caf](https://github.com/Mobizinc/terraform-azurerm-caf))
Base terraform module for the landing zones on Terraform part of Microsoft Cloud Adoption Framework for Azure
`ap059750`
 5  HCL  MIT license  2023-08-04 14:31:01 |

|14|[**servierhub/shuju**](https://github.com/servierhub/shuju) (forked from: [RomualdRousseau/ShuJu](https://github.com/RomualdRousseau/ShuJu))
Collection of various algorithms implemented in Java covering domains such as mathematics and data.
`data-science`, `mathematics`, `servier`
 Java  GPL-3.0 license  2024-05-23 19:19:37 |

|14|[**servierhub/any2json**](https://github.com/servierhub/any2json) (forked from: [RomualdRousseau/Any2Json](https://github.com/RomualdRousseau/Any2Json))
Framework to manipulate semi structured documents and extract data from them
`excel`, `semi-structured-data`, `servier`, `table-extraction`
 Java  GPL-3.0 license  2024-05-23 19:19:17 |

|14|[**servierhub/libgh**](https://github.com/servierhub/libgh) (forked from: [HubTou/libgh](https://github.com/HubTou/libgh))
GitHub scraping tool and library
 Python  BSD-3-Clause license  2024-05-22 21:44:59 |

|14|[**servierhub/tala**](https://github.com/servierhub/tala) (forked from: [HubTou/tala](https://github.com/HubTou/tala))
Microsoft Teams Audit Log Analyzer
`analysis`, `audit-log`, `audit-logs`, `disconnects`, `logs`, `microsoft-teams`, `teams`, `troubleshooting`
 Python  BSD-3-Clause license  2024-03-27 10:54:13 |

|14|[**servierhub/adsv**](https://github.com/servierhub/adsv) (forked from: [HubTou/adsv](https://github.com/HubTou/adsv))
Analyze delimiter-separated values files
`csv`, `csv-converter`, `csv-format`, `csv-parser`, `csv-parsing`, `csv-reader`, `csv-reading`, `data`, `data-analysis`, `data-engineering`, `data-mining`
 Python  BSD-3-Clause license  2024-03-27 10:54:00 |

|14|[**servierhub/wis**](https://github.com/servierhub/wis) (forked from: [HubTou/wis](https://github.com/HubTou/wis))
Bulk WHOIS Search
`network-analysis`, `network-security`, `network-visualization`, `route`, `routes`, `security-tools`, `shadow-it`, `tcp-ip`, `tcpip`, `whois`, `whois-information`, `whois-lookup`
 Python  BSD-3-Clause license  2024-03-27 10:53:50 |

|14|[**servierhub/certwatch**](https://github.com/servierhub/certwatch) (forked from: [HubTou/certwatch](https://github.com/HubTou/certwatch))
Watch the certificates expiration dates for a list of hostname:hostport
`certificate`, `certificates`, `cryptography`, `domain`, `expiration`, `expiry`, `security`, `security-automation`, `security-scanner`, `security-tools`, `tls`, `tls-certificate`, `x509`, `x509-parser`, `x509certificates`
 Python  BSD-3-Clause license  2024-03-27 10:53:17 |

|14|[**bmx-helpdesk/PimpMyLog**](https://github.com/bmx-helpdesk/PimpMyLog) (forked from: [potsky/PimpMyLog](https://github.com/potsky/PimpMyLog))
🍭 Log viewer for your web server
 PHP  GNU General Public License v3.0  2021-10-28 19:48:49 |

|14|[**bmx-helpdesk/Activity**](https://github.com/bmx-helpdesk/Activity) (forked from: [m1guelpf/Activity](https://github.com/m1guelpf/Activity))
A PHP API to log anything anywhere
 PHP  Mozilla Public License 2.0  2019-11-16 17:14:20 |

|14|[**ceva-sante-animale/upload-production-reports**](https://github.com/ceva-sante-animale/upload-production-reports)
 Python  2024-06-06 07:41:39 |

|14|[**ceva-sante-animale/label-studio-app**](https://github.com/ceva-sante-animale/label-studio-app) (forked from: [HumanSignal/label-studio](https://github.com/HumanSignal/label-studio))
This is a fork based on the original open source label studio.Label Studio is a multi-type data labeling and annotation tool with standardized output format
 JavaScript  Apache-2.0 license  2024-03-26 06:04:47 |

|14|[**ceva-sante-animale/atinternet-apple-sdk**](https://github.com/ceva-sante-animale/atinternet-apple-sdk) (forked from: [MaximeLM/atinternet-apple-sdk](https://github.com/MaximeLM/atinternet-apple-sdk))
Fork of AT Internet mobile analytics solution for Apple devices (SPM support)
 Swift  MIT license  2022-04-14 15:02:47 |

|14|[**Guerbet-AI/torchtransforms**](https://github.com/Guerbet-AI/torchtransforms)
Batched data augmentation for 3D images, in pure PyTorch
 GNU General Public License v3.0  2023-05-22 08:18:16 |

|14|[**Boiron/boiron-tradeshow-reporting-website**](https://github.com/Boiron/boiron-tradeshow-reporting-website)
 1  SCSS  2020-10-20 15:59:32 |

|14|[**Boiron/Boiron.ca-Documentation**](https://github.com/Boiron/Boiron.ca-Documentation)
This repo can be used to find information related to Canada's Boiron website, Boiron.ca.
 1  2020-10-20 15:58:03 |

|14|[**Boiron/Boiron-Guardrails-For-Developers**](https://github.com/Boiron/Boiron-Guardrails-For-Developers)
This is the comprehensive list of dos and don'ts for developing websites
 1  MIT License  2020-10-20 15:54:49 |

|14|[**Boiron/DPR-QUIZ-ALGOS**](https://github.com/Boiron/DPR-QUIZ-ALGOS) (forked from: [McGeehan/DPR-QUIZ-ALGOS](https://github.com/McGeehan/DPR-QUIZ-ALGOS))
Algorithm Quiz 1
 Java  MIT License  2019-02-27 01:41:51 |

|14|[**Boiron/angularjs-googleanalytics**](https://github.com/Boiron/angularjs-googleanalytics) (forked from: [realsnick/angularjs-googleanalytics](https://github.com/realsnick/angularjs-googleanalytics))
integrating google analytics to angular-js
 JavaScript  2019-02-04 17:39:09 |

|14|[**Boiron/WebBuild2019Jan**](https://github.com/Boiron/WebBuild2019Jan)
 JavaScript  2019-01-15 19:12:28 |

|14|[**Boiron/WebBuildBMF**](https://github.com/Boiron/WebBuildBMF)
webbuild bmf jan 15 2019
 JavaScript  2019-01-15 19:01:34 |

|14|[**Boiron/myapp**](https://github.com/Boiron/myapp)
 JavaScript  2019-01-02 15:51:54 |

|14|[**Boiron/BMF-2018-2019**](https://github.com/Boiron/BMF-2018-2019)
 2018-12-21 18:32:01 |

|14|[**Boiron/phonegap-app-developer**](https://github.com/Boiron/phonegap-app-developer) (forked from: [phonegap/phonegap-app-developer](https://github.com/phonegap/phonegap-app-developer))
PhoneGap Developer App
 JavaScript  Apache License 2.0  2018-12-03 17:03:15 |

|14|[**Boiron/Boiron-s-Hacky-Couponing-Solution**](https://github.com/Boiron/Boiron-s-Hacky-Couponing-Solution)
The strange and convoluted system we use to superficially add expire dates that don't matter to coupons via some PHP written 10 years ago.
 2018-11-29 20:01:46 |

|14|[**Boiron/Partners_Portal_Canada**](https://github.com/Boiron/Partners_Portal_Canada)
Partners Portal Backup Location and Active Plugins
 2018-11-21 14:52:54 |

|14|[**Boiron/cordova-screenshot**](https://github.com/Boiron/cordova-screenshot) (forked from: [gitawego/cordova-screenshot](https://github.com/gitawego/cordova-screenshot))
screenshot plugin for cordova/phonegap
 Java  Other  2018-10-17 18:46:21 |

|14|[**Boiron/Camilia-Site-Documentation**](https://github.com/Boiron/Camilia-Site-Documentation)
 2018-10-16 17:54:58 |

|14|[**Boiron/B2B**](https://github.com/Boiron/B2B)
Documentation for our business to business website
 2018-09-25 16:55:04 |

|14|[**Boiron/Boiron-Partners-Portal-Documentation**](https://github.com/Boiron/Boiron-Partners-Portal-Documentation)
Documentation for that magical site where customers go to get images
 2018-09-25 15:45:43 |

|14|[**Boiron/CEDH-Course-1**](https://github.com/Boiron/CEDH-Course-1)
 2018-08-30 16:56:46 |

|14|[**Boiron/Db-Latin-Problems**](https://github.com/Boiron/Db-Latin-Problems)
 2018-08-27 13:20:28 |

|14|[**Boiron/oscillo.com-Documentation**](https://github.com/Boiron/oscillo.com-Documentation)
Some information about how oscillo.com has been developed, what plugins are essential, and some do's and dont's.
 2018-08-23 18:12:52 |

|14|[**Boiron/shop.boironusa.com-Documentation**](https://github.com/Boiron/shop.boironusa.com-Documentation)
Some information about how shop.boironusa.com has been developed, what plugins are essential, and some do's and dont's.
 2018-08-23 18:03:17 |

|14|[**Boiron/pdf_2018-2019**](https://github.com/Boiron/pdf_2018-2019)
 2018-07-11 16:05:52 |

|14|[**Boiron/List-of-US-States**](https://github.com/Boiron/List-of-US-States) (forked from: [jasonong/List-of-US-States](https://github.com/jasonong/List-of-US-States))
List of US States in various Rails friendly formats
 2018-02-25 00:12:43 |

[^1]: This page was generated with the [topgh](https://github.com/HubTou/topgh) open source software on 2024-06-09

[^2]: With headquarters located in France and independent from other groups