https://github.com/sgibb/maldiquant

Quantitative Analysis of Mass Spectrometry Data
https://github.com/sgibb/maldiquant

cran maldi maldi-ims maldi-tof-ms mass-spectrometry r r-package

Last synced: about 7 hours ago
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Quantitative Analysis of Mass Spectrometry Data

• Host: GitHub
• URL: https://github.com/sgibb/maldiquant
• Owner: sgibb
• Created: 2012-10-07T19:48:42.000Z (about 12 years ago)
• Default Branch: master
• Last Pushed: 2024-08-20T18:10:39.000Z (4 months ago)
• Last Synced: 2024-12-24T03:08:34.857Z (7 days ago)
• Topics: cran, maldi, maldi-ims, maldi-tof-ms, mass-spectrometry, r, r-package
• Language: R
• Homepage: https://strimmerlab.github.io/software/maldiquant/
• Size: 1.72 MB
• Stars: 63
• Watchers: 10
• Forks: 26
• Open Issues: 5
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS
  • Citation: CITATION.cff
  • Codemeta: codemeta.json

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README

        
# MALDIquant

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Quantitative Analysis of Mass Spectrometry Data

## Description

MALDIquant provides a complete analysis pipeline for

matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF)

and other two-dimensional mass spectrometry data.

In addition to commonly used plotting and processing methods it

includes distinctive features, namely baseline

subtraction methods such as morphological filters (TopHat) or the

statistics-sensitive non-linear iterative peak-clipping algorithm

(SNIP), peak alignment using warping functions, handling of replicated

measurements as well as allowing spectra with different resolutions.

Please visit: https://strimmerlab.github.io/software/maldiquant/

## Contact

You are welcome to:

* submit suggestions and bug-reports at: 

* send a pull request on: 

* compose an e-mail to: 

## Install

You can install the latest release directly from

[CRAN](https://cran.r-project.org/web/packages/MALDIquant/index.html).

```r

install.packages("MALDIquant")

```

## Install development version (not recommended)

[GitHub](https://github.com) is not directly supported by the basic

`install.packages` command. You could use the

[devtools](https://cran.r-project.org/web/packages/devtools/index.html) package

to install the development version of MALDIquant

(you will need a complete development environment to compile the some c code).

```r

install.packages("devtools")

library("devtools")

install_github("sgibb/MALDIquant")

```

## Examples

To illustrate the application of MALDIquant for analyses of mass spectrometry

data please find a number of example R scripts in the

[MALDIquantExamples](https://github.com/sgibb/MALDIquantExamples) repository.