https://github.com/silmathoron/elif-madexp

Energy-based neuronal models (eLIF and mAdExp)
https://github.com/silmathoron/elif-madexp

brian energy modeling nest neuron neuroscience simulators

Last synced: about 1 month ago
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Energy-based neuronal models (eLIF and mAdExp)

• Host: GitHub
• URL: https://github.com/silmathoron/elif-madexp
• Owner: Silmathoron
• License: bsd-2-clause
• Created: 2020-02-14T17:48:14.000Z (almost 5 years ago)
• Default Branch: main
• Last Pushed: 2021-09-17T09:04:59.000Z (over 3 years ago)
• Last Synced: 2024-10-12T18:27:01.802Z (2 months ago)
• Topics: brian, energy, modeling, nest, neuron, neuroscience, simulators
• Language: Python
• Size: 29.3 KB
• Stars: 0
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# Energy-based models (eLIF and mAdExp)

## Content

This repository contains implementations of the eLIF and mAdExp models

for BRIAN, NEST, and NEURON.

## Installing the models

### BRIAN

Just install the BRIAN simulator via pip:

    pip install --user brian2

### NEST

* Install NEST (see [here](https://nest-simulator.readthedocs.io/en/stable/installation/index.html#advanced-install))

* Install NESTML using ``pip install nestml`` (this code requires NESTML >= 4).

* Then run ``python nestml/nestml_install.py`` to install the models.

* See the [FAQ](https://man.sr.ht/~tfardet/elif-madexp/FAQ.md) if you encouter any issue.

### NEURON

* Download and install NEURON (see [here](https://www.neuron.yale.edu/neuron/download))

* Compile the models via ``nrnivmodl elif.mod`` and

  ``nrnivmodl madexp.mod``

## Running the models

Once the installation of one of the simulators is done, you can run the

corresponding files:

* ``elif_brian_impl.py`` or ``madexp_brian_impl.py`` for BRIAN

* ``elif_nest_impl.py`` or ``madexp_nest_impl.py`` for NEST

* ``elif_neuron_impl.py`` or ``madexp_neuron_impl.py`` for NEURON

To do this, you can call them with python using e.g.

``python elif_brian_impl.py``.