https://github.com/simonsfoundation/tr1_batfko
Critical role of the transcription factors IRF1 and BATF in preparing the chromatin landscape during Type 1 regulatory cell differentiation
https://github.com/simonsfoundation/tr1_batfko
Last synced: 2 months ago
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Critical role of the transcription factors IRF1 and BATF in preparing the chromatin landscape during Type 1 regulatory cell differentiation
- Host: GitHub
- URL: https://github.com/simonsfoundation/tr1_batfko
- Owner: simonsfoundation
- License: bsd-2-clause
- Created: 2016-12-23T12:42:55.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2016-12-23T19:25:32.000Z (over 9 years ago)
- Last Synced: 2025-12-25T19:54:38.277Z (6 months ago)
- Language: Jupyter Notebook
- Size: 332 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# Tr1_BatfKO_Irf1KO_Networks
Critical role of the transcription factors IRF1 and BATF in preparing the chromatin landscape during Type 1 regulatory cell differentiation
IRF1 KO and BATF KO networks from Figures 7F-I, Supplemental Figures 7-8, Karwacz et al. 2017. Nature Immunology.
This repository is intended to be used with the Binder service.
Please click the image below: if all is well the link should redirect
to a new binder image running a Jupyter notebook server.
Once the binder is launched, click on "Irf1KO_BatfKO_Tr1_networks.ipynb". The iPython
notebook will open in a new tab. Then, to visualize networks:
1. Select "Cell" and then click "Run All"
2. Draft Documentation for this tool can be found here:
https://github.com/simonsfoundation/jp_gene_viz/blob/master/doc/dNetwork%20widget%20overview.ipynb