https://github.com/smithlabcode/radmeth
https://github.com/smithlabcode/radmeth
Last synced: 6 months ago
JSON representation
- Host: GitHub
- URL: https://github.com/smithlabcode/radmeth
- Owner: smithlabcode
- License: gpl-3.0
- Created: 2014-03-27T23:31:05.000Z (about 12 years ago)
- Default Branch: master
- Last Pushed: 2014-05-01T22:47:02.000Z (almost 12 years ago)
- Last Synced: 2025-04-01T00:29:55.675Z (about 1 year ago)
- Language: C++
- Size: 350 KB
- Stars: 3
- Watchers: 14
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
RADMeth: Regression Analysis of Differential Methylation
========================================================
RADMeth: Regression Analysis of Differential Methilation is a software for
computing individual differentially methylated sites and genomic regions in
whole genome bisulfite sequencing (WGBS) data.
Contact Information
-------------------
Egor Dolzhenko
dolzhenk@usc.edu
http://smithlabresearch.org/
Installation
------------
*Before attempting to compile RADMeth please make sure that GNU Scientific
Library (http://www.gnu.org/software/gsl/) is installed on your system*
Alternatively, you can download pre-compiled binaries for either Linux or Mac
from http://smithlabresearch.org/software/radmeth/
To compile RADMeth, enter the program's root directory (e.g. radmeth/) and
execute
> make
After the compilation, the binaries can be found in radmeth/bin/
Usage
-----
Please see the manual, which can be obtained at
http://smithlabresearch.org/software/radmeth/
License
-------
Copyright (C) 2013 University of Southern California and
Egor Dolzhenko
Andrew D Smith
Authors: Andrew D. Smith and Egor Dolzhenko
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.