https://github.com/soedinglab/coco

Consensus Correction
https://github.com/soedinglab/coco

Last synced: 1 day ago
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Consensus Correction

• Host: GitHub
• URL: https://github.com/soedinglab/coco
• Owner: soedinglab
• License: gpl-3.0
• Created: 2018-07-03T09:35:11.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2022-04-23T16:44:08.000Z (about 4 years ago)
• Last Synced: 2025-11-21T12:04:16.505Z (7 months ago)
• Language: C++
• Homepage:
• Size: 15.1 MB
• Stars: 1
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# CoCo

CoCo is a software suite for different **Co**nsensus **Co**rrection applications using spaced k-mer count profiles of short reads or contigs. CoCo is open source GPL-licensed software implemented in C++.

### Compile from source

To compile CoCo `git`, a `C++/11` capable compiler (e.g. `gcc 4.7+`, `clang 3.5+`) and `cmake` (3.10 or higher) are required. Afterwards, the CoCo binary will be located in the `build/` directory.

      git clone https://github.com/soedinglab/CoCo.git

      cd CoCo

      git submodule update --init

      mkdir build && cd build

      cmake -DCMAKE_BUILD_TYPE=RELEASE -DCMAKE_INSTALL_PREFIX=. ..

      make -j 4