https://github.com/soedinglab/prosstt-scripts
https://github.com/soedinglab/prosstt-scripts
Last synced: 8 months ago
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- Host: GitHub
- URL: https://github.com/soedinglab/prosstt-scripts
- Owner: soedinglab
- Created: 2018-02-26T09:54:51.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2019-06-13T13:19:54.000Z (about 7 years ago)
- Last Synced: 2025-01-09T06:51:24.916Z (over 1 year ago)
- Language: Jupyter Notebook
- Size: 48.1 MB
- Stars: 0
- Watchers: 5
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
### PROSSTT scripts
PROSSTT (PRObabilistic Simulations of ScRNA-seq Tree-like Topologies) is a package with code for the simulation of scRNAseq data for dynamic processes such as cell differentiation. PROSSTT is open source GPL-licensed software implemented in Python (also see the [repository](https://github.com/soedinglab/prosstt/) and the [paper](https://www.biorxiv.org/content/early/2018/01/31/256941.1)).
Here we present the Jupyter notebooks and the python code that were used for the analysis of scRNA-seq data and the fitting of hyperparameters (referenced in the Supplementary Material of the paper).