https://github.com/stuntspt/structure_threader

A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".
https://github.com/stuntspt/structure_threader

clustering doi genetics parallelize pypi python science structure structure-threader wrapper

Last synced: 7 months ago
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A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".

• Host: GitHub
• URL: https://github.com/stuntspt/structure_threader
• Owner: StuntsPT
• License: gpl-3.0
• Created: 2015-03-03T12:56:42.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2023-08-02T10:10:09.000Z (about 2 years ago)
• Last Synced: 2025-03-18T02:12:19.210Z (7 months ago)
• Topics: clustering, doi, genetics, parallelize, pypi, python, science, structure, structure-threader, wrapper
• Language: Python
• Homepage:
• Size: 50 MB
• Stars: 24
• Watchers: 5
• Forks: 10
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE

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README

          
# Structure_threader

A program to parallelize the runs of [Structure](http://web.stanford.edu/group/pritchardlab/structure.html),  [fastStructure](https://rajanil.github.io/fastStructure/), [MavericK](http://www.bobverity.com/home/maverick/what-is-maverick/) and [ALStructure](https://github.com/StoreyLab/alstructure) software.

[![Travis Status](https://travis-ci.org/StuntsPT/Structure_threader.svg?branch=master)](https://travis-ci.org/StuntsPT/Structure_threader) [![Documentation Status](https://readthedocs.org/projects/structure-threader/badge/?version=latest)](http://structure-threader.readthedocs.io/en/latest/?badge=latest)

[![DOI](https://zenodo.org/badge/31598374.svg)](https://zenodo.org/badge/latestdoi/31598374)

[![Codacy Badge](https://app.codacy.com/project/badge/Grade/becafd10f0bc4904b6d2857cf4c47ea4)](https://www.codacy.com/gh/StuntsPT/Structure_threader/dashboard?utm_source=github.com&utm_medium=referral&utm_content=StuntsPT/Structure_threader&utm_campaign=Badge_Grade)

[![Pipeline Status](https://gitlab.com/StuntsPT/Structure_threader/badges/master/pipeline.svg)](https://gitlab.com/StuntsPT/Structure_threader/pipelines)

## Installation

```bash

pip3 install structure_threader

```

*Structure_threader* is available on

[Pypi](https://pypi.python.org/pypi/structure_threader/). It can be

installed by simply running the above command. If you are on a \*nix like

platform, you can use the `--user` option if you can't or don't want to install

the program as `root` user. Binaries for STRUCTURE, fastStructure and

*MavericK* are also distributed for GNU/Linux and Mac OS X. For more details,

please [check the

manual](http://structure-threader.readthedocs.io/en/latest/install/).

## Manual

The complete documentation can be found on [readthedocs.org](http://structure-threader.readthedocs.io/en/latest/).

## Citation

If you use *Structure_threader*, please cite our

~~[Zenodo DOI](https://zenodo.org/badge/latestdoi/31598374).~~

[Molecular Ecology Resources paper](http://doi.org/10.1111/1755-0998.12702)

### Full citation:



  
Pina-Martins, F., Silva, D. N., Fino, J., & Paulo, O. S. (2017). Structure_threader: An improved method for automation and parallelization of programs structure, fastStructure and MavericK on multicore CPU systems. Molecular Ecology Resources, n/a-n/a. doi:10.1111/1755-0998.12702

  



## License

GPLv3