https://github.com/synbiodex/sboldesigner

SBOL Designer Project
https://github.com/synbiodex/sboldesigner

Last synced: 17 days ago
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SBOL Designer Project

• Host: GitHub
• URL: https://github.com/synbiodex/sboldesigner
• Owner: SynBioDex
• License: apache-2.0
• Created: 2015-12-06T04:46:13.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2021-06-04T00:02:22.000Z (over 3 years ago)
• Last Synced: 2024-04-15T00:09:26.545Z (10 months ago)
• Language: Java
• Homepage:
• Size: 105 MB
• Stars: 27
• Watchers: 11
• Forks: 8
• Open Issues: 32
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

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README

        
SBOL Designer

=============

SBOL designer allows you to visualize SBOL designs using SBOL visual icons, edit SBOL designs 

in a GUI, import genetic constructs from an SBOL parts registry, and save your design an SBOL file.

Running SBOL Designer stand-alone

=================================

SBOLDesigner requires Java 8 to be installed on your computer. To run SBOL designer, 

simply double click the jar file, which can be downloaded from https://github.com/SynBioDex/SBOLDesigner/releases. If your OS does not support running Java applications by double clicking, you can run the designer from command-line by using the `java -jar ` command at a terminal where `jarFileName` will be the name of the SBOL Designer jar file you

downloaded.

Instruction

=============

Comprehensive instructions for using SBOLDesigner can be found here: https://sboldesigner.github.io/

Compilation

=================================

In order to build SBOLDesigner from source, type the following into a Windows shell or create an Eclipse Maven run configuration that has the following goals (excluding the "mvn") after cloning this repository:

mvn clean install exec:java -Dexec.mainClass="edu.utah.ece.async.sboldesigner.sbol.editor.SBOLDesignerStandalone" && mvn package

Citation

========

M. Zhang, J. McLaughlin, A. Wipat, and C. Myers, [SBOLDesigner 2: An Intuitive Tool for Structural Genetic Design](https://pubs.acs.org/doi/abs/10.1021/acssynbio.6b00275), in ACS Synthetic Biology 6(7): 1150-1160, July 21, 2017.

More information

================

See [http://github.com/SynBioDex/SBOLDesigner/](http://github.com/SynBioDex/SBOLDesigner/) for more information on SBOL designer. Send your questions and comments about SBOL Designer to [[email protected]](mailto:[email protected]).

For the previous version (unsupported) of SBOL Designer, see [http://github.com/clarkparsia/sbol/](http://github.com/clarkparsia/sbol/).