https://github.com/synbiodex/sboljs3

A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js
https://github.com/synbiodex/sboljs3

bioinformatics biology sbol synbio

Last synced: 4 months ago
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A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js

• Host: GitHub
• URL: https://github.com/synbiodex/sboljs3
• Owner: SynBioDex
• Created: 2017-09-16T17:15:16.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2023-07-03T01:17:46.000Z (almost 3 years ago)
• Last Synced: 2024-08-22T14:46:31.677Z (almost 2 years ago)
• Topics: bioinformatics, biology, sbol, synbio
• Language: TypeScript
• Homepage:
• Size: 1.86 MB
• Stars: 4
• Watchers: 2
• Forks: 1
• Open Issues: 16
• Metadata Files:
  • Readme: README.md

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README

          
**sboljs3** is a library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js. 

sboljs3 is built on [rdfoo](https://github.com/udp/rdfoo), a library for creating object oriented RDF abstractions in TypeScript.  It can therefore be used in conjunction with other rdfoo abstractions.  For example, the PROV-O abstraction used by sboljs3 is provided by [rdfoo-prov](https://github.com/udp/rdfoo-prov).

# Implemented so far

* Reading and writing SBOL1, SBOL2, and SBOL3

* Converting between SBOL1, SBOL2, and SBOL3

* Reading (converting) FASTA and GenBank

# Not implemented so far

* Writing FASTA and GenBank

* Validation

# Citation

If you use this library in your work, please cite

    @article{sboljs,

      author = {McLaughlin, James Alastair and Myers, Chris J. and Zundel, Zach and Wilkinson, Nathan and Atallah, Christian and Wipat, Anil},

      title = {sboljs: Bringing the Synthetic Biology Open Language to the Web Browser},

      journal = {ACS Synthetic Biology},

      volume = {8},

      number = {1},

      pages = {191-193},

      year = {2019},

      doi = {10.1021/acssynbio.8b00338},

      URL = { https://doi.org/10.1021/acssynbio.8b00338 },

      eprint = {  https://doi.org/10.1021/acssynbio.8b00338 }

    }