https://github.com/sysbiochalmers/kiwi
The Kiwi python package combines gene-set analyses with biological networks to visualize the interactions between genesets that are significant in a given biological system.
https://github.com/sysbiochalmers/kiwi
Last synced: 16 days ago
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The Kiwi python package combines gene-set analyses with biological networks to visualize the interactions between genesets that are significant in a given biological system.
- Host: GitHub
- URL: https://github.com/sysbiochalmers/kiwi
- Owner: SysBioChalmers
- License: mit
- Created: 2016-03-09T08:17:07.000Z (over 10 years ago)
- Default Branch: master
- Last Pushed: 2017-10-10T06:38:14.000Z (over 8 years ago)
- Last Synced: 2025-01-30T22:51:18.550Z (over 1 year ago)
- Language: Python
- Homepage: http://www.sysbio.se/kiwi
- Size: 5.19 MB
- Stars: 2
- Watchers: 5
- Forks: 2
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGES.txt
- License: LICENSE.txt
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README
# Kiwi
What is Kiwi? Kiwi combines gene-set analysis with biological networks to visualize the interactions between gene-sets that are significant in a given biological system. You can read more about this in the [publication](http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-014-0408-9) and on the [Kiwi webpage](http://www.sysbio.se/kiwi).
## Release version
Kiwi is released on PyPI and all information about how to install and run Kiwi can be found on the [Kiwi webpage](http://www.sysbio.se/kiwi). The easiest way to install Kiwi with all required dependencies is to run:
```
pip install KiwiDist
```
## Development version
The source code is hosted on GitHub, so if you want to install the latest development version of Kiwi, fork and clone this repository and run:
```
python install setup.py
```
## Pre-compiled gene-set networks for metabolic networks
There are some gene-set network (GSN) files and gene-set collection (GSC) files in the kiwi/data directory.