https://github.com/sysbiochalmers/sybil
Efficient Constrained Based Modelling in R
https://github.com/sysbiochalmers/sybil
Last synced: 11 months ago
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Efficient Constrained Based Modelling in R
- Host: GitHub
- URL: https://github.com/sysbiochalmers/sybil
- Owner: SysBioChalmers
- License: gpl-3.0
- Created: 2022-02-15T08:11:21.000Z (over 4 years ago)
- Default Branch: main
- Last Pushed: 2023-08-02T05:25:35.000Z (almost 3 years ago)
- Last Synced: 2025-06-04T13:30:09.274Z (about 1 year ago)
- Language: R
- Homepage:
- Size: 619 KB
- Stars: 6
- Watchers: 5
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# sybil - Efficient Constrained Based Modelling in R
The package `sybil` is a Systems Biology Library for R, implementing algorithms for constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis).
### Installation
For various reasons, `sybil` is temporarily not available on CRAN anymore. Until then, use the following commands in the R console to install this package:
```R
install.packages("remotes")
remotes::install_github("SysBioChalmers/sybil")
```
### Cite us
If you use _sybil_ in your work, please cite:
> Gelius-Dietrich _et al_. sybil – Efficient constraint-based modelling in R. BMC Syst Biol 7, 125 (2013). doi: [10.1186/1752-0509-7-125](https://doi.org/10.1186/1752-0509-7-125)
### Contact
If you're facing any problems, please open an [issue](https://github.com/SysBioChalmers/sybil/issues/new) or a [discussion](https://github.com/SysBioChalmers/sybil/discussions/new) or join the [](https://gitter.im/SysBioChalmers/RAVEN?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge).
_Note_: This repository was previously hosted at https://gitlab.cs.uni-duesseldorf.de/general/ccb/sybil.