https://github.com/thefloatingstring/adage
2019 Canada-Wide Science Fair project: a tool to identify transcription factors (activating genes) based on target genes
https://github.com/thefloatingstring/adage
Last synced: 11 months ago
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2019 Canada-Wide Science Fair project: a tool to identify transcription factors (activating genes) based on target genes
- Host: GitHub
- URL: https://github.com/thefloatingstring/adage
- Owner: TheFloatingString
- Created: 2019-02-12T15:34:13.000Z (almost 7 years ago)
- Default Branch: master
- Last Pushed: 2024-03-11T21:05:47.000Z (almost 2 years ago)
- Last Synced: 2025-01-13T08:12:47.909Z (about 1 year ago)
- Language: HTML
- Homepage:
- Size: 13.9 MB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# ADAGE - ADaptive Analysis of Genetic Elements
This ensemble model combines CNN's with chromosomal locations and genomic graph traversals to identify transcription factors ("activator genes") that are responsible for specific cellular functions (such as CNS neuron regeneration, or suppression for a specific type of tumor).
Presented at the 2019 Canada-Wide Science Fair, and at the 2019 Sanofi Biogenius (Canadian Final).
### Quickstart
```
pip install -r requirements.txt
python app.py
```
### Potential Runtime Issues
Note: as of January 4, 2023, there are potential runtime issues due to Python dependency versioning and internal model dimension changes.
Please feel free to report any runtime errors via Issues on the GitHub repo.
Thank you in advance!