https://github.com/thejacksonlaboratory/mbiome_containers

Docker and Singular container definition files, as used by the MbiomeCore at JAX-GM
https://github.com/thejacksonlaboratory/mbiome_containers

containers docker microbiome singularity

Last synced: 10 days ago
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Docker and Singular container definition files, as used by the MbiomeCore at JAX-GM

• Host: GitHub
• URL: https://github.com/thejacksonlaboratory/mbiome_containers
• Owner: TheJacksonLaboratory
• License: gpl-3.0
• Created: 2020-01-08T14:48:56.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2020-03-30T16:51:29.000Z (about 6 years ago)
• Last Synced: 2026-01-30T07:33:54.048Z (4 months ago)
• Topics: containers, docker, microbiome, singularity
• Language: Shell
• Homepage:
• Size: 34.2 KB
• Stars: 3
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
## Containers Definition Files

### for JAX-GM Microbiome Core

Each app used in our analysis pipelines will have its own folder, containing

a `Dockerfile` and the `Docker` and converted `Singularity` images.

### Image Build Example

Build a `docker` image from a `Dockerfile`, push it to docker hub,

then use `singularity` to pull and convert it into a `.sif` image file.

```

    DockerAccount="my_username"

    ImageName="flash_assembler"

    ImageTag="1.2.11"

    docker build -t ${DockerAccount}/${ImageName}:${ImageTag} ${ImageName}/

    # test resulting image's container commands...

    docker push ${DockerAccount}/${ImageName}:${ImageTag}

    singularity pull ${ImageName}/${ImageName}.sif docker://${DockerAccount}/${ImageName}:${ImageTag}

```