https://github.com/tjake/dockerfold

Run AlphaFold casp13 model in docker (On a Mac)
https://github.com/tjake/dockerfold

Last synced: about 1 year ago
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Run AlphaFold casp13 model in docker (On a Mac)

• Host: GitHub
• URL: https://github.com/tjake/dockerfold
• Owner: tjake
• Created: 2020-12-13T18:42:36.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2020-12-13T19:32:37.000Z (over 5 years ago)
• Last Synced: 2025-02-14T11:52:09.186Z (over 1 year ago)
• Language: Shell
• Size: 1000 Bytes
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
## Running AlphaFold with Docker

 Setup of the [alphafold casp13](https://github.com/deepmind/deepmind-research/tree/master/alphafold_casp13) model is only for linux, this tool allows anyone with docker (mac,pc,etc) to run the model.

### Installation:

  * Install [Docker for Mac](https://hub.docker.com/editions/community/docker-ce-desktop-mac/)

  

  * Download [this code](https://github.com/tjake/DockerFold/archive/dockerfold.zip)

     `curl -L https://github.com/tjake/DockerFold/archive/master.zip --output dockerfold.zip`

     

     `unzip dockerfold.zip`

     `cd DockerFold-master`

  * Download the model data **(45GB)**

     `curl -L http://bit.ly/alphafold-casp13-data --output data.zip`

  * Unzip data into same directory

  

     `unzip data.zip -d data`

  * Run model and generate output (first run will build the docker image)

  

     `./run.sh -i data -t T1019s2 -o output_T1019s2`  

     **This will take many hours to run!**