https://github.com/tlnagy/nagy_2023_swellmigration

Code used to generate the figures for the "Neutrophils Actively Swell to Potentiate Migration" paper
https://github.com/tlnagy/nagy_2023_swellmigration

dataset image-analysis-and-processing julia microscopy-data reproducible-paper reproducible-research

Last synced: about 3 hours ago
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Code used to generate the figures for the "Neutrophils Actively Swell to Potentiate Migration" paper

• Host: GitHub
• URL: https://github.com/tlnagy/nagy_2023_swellmigration
• Owner: tlnagy
• Created: 2023-10-31T00:17:39.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2024-05-21T18:18:54.000Z (6 months ago)
• Last Synced: 2024-10-12T14:54:39.611Z (about 1 month ago)
• Topics: dataset, image-analysis-and-processing, julia, microscopy-data, reproducible-paper, reproducible-research
• Language: Julia
• Homepage: http://tamasnagy.com/Nagy_2023_SwellMigration/
• Size: 32.6 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Code for "Neutrophils actively swell to potentiate rapid migration" 

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.11226815.svg)](https://doi.org/10.5281/zenodo.11226815)

[![CI](https://github.com/tlnagy/Nagy_2023_SwellMigration/actions/workflows/CI.yml/badge.svg)](https://github.com/tlnagy/Nagy_2023_SwellMigration/actions/workflows/CI.yml)

[![website](https://img.shields.io/badge/code_and_figures-blue)](https://tamasnagy.com/Nagy_2023_SwellMigration)

This is the code used to generate the figures in my paper:

**Nagy, T.L.**, Strickland, E., and Weiner, O.D. (2023). Neutrophils actively swell to potentiate rapid migration. Elife. 10.7554/elife.90551.

Please cite the paper if any of this is useful to you. This code base

automatically generates and builds most of the figures and movies in the paper

and generates a nice website that's viewable here: 

click here >>> [![website](https://img.shields.io/badge/code_and_figures-blue)](https://tamasnagy.com/Nagy_2023_SwellMigration)

To do this the code in this repository:

1. Downloads the necessary data from

   [DataDryad](https://datadryad.org/stash/dataset/doi:10.7272/Q6NS0S5N)

2. Runs the analysis to generate the figures

3. Builds the website

See the [Overview](https://tamasnagy.com/Nagy_2023_SwellMigration/#Overview) of

the website to see how to run the codebase locally.