https://github.com/tmcdonell/hfx

Accelerated cross-correlation based identification of protein sequences
https://github.com/tmcdonell/hfx

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Accelerated cross-correlation based identification of protein sequences

• Host: GitHub
• URL: https://github.com/tmcdonell/hfx
• Owner: tmcdonell
• License: bsd-3-clause
• Created: 2011-08-08T01:51:13.000Z (almost 15 years ago)
• Default Branch: master
• Last Pushed: 2012-07-17T04:07:34.000Z (almost 14 years ago)
• Last Synced: 2025-02-17T21:04:37.758Z (over 1 year ago)
• Language: C++
• Homepage:
• Size: 23.5 MB
• Stars: 2
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
HFX

===

A program for fast protein identification, written in Haskell and accelerated

using CUDA for NVIDIA GPUs. This is an implementation of the SEQUEST algorithm,

using cross-correlation based identification of protein sequences from tandem MS

spectra.

  * [1] J. K. Eng, B. Fischer, J. Grossmann, and M. J. MacCoss. "A fast sequest

        cross correlation algorithm." Journal of Proteome Research,

        7(10):4598-4602, 2008.

  * [2] J. K. Eng, A. L. McCormack, and I. John R. Yates. "An approach to

        correlate tandem mass spectral data of peptides with amino acid sequences

        in a protein database." Journal of the American Society for Mass

        Spectrometry, 5(11):976-989, November 1994.