https://github.com/toxpi/toxpir

toxpiR R package for the Toxicological Priority Index (ToxPi) algorithm.
https://github.com/toxpi/toxpir

data-science modeling r r-package toxicology

Last synced: 11 months ago
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toxpiR R package for the Toxicological Priority Index (ToxPi) algorithm.

• Host: GitHub
• URL: https://github.com/toxpi/toxpir
• Owner: ToxPi
• License: gpl-3.0
• Created: 2022-02-02T20:42:05.000Z (over 4 years ago)
• Default Branch: main
• Last Pushed: 2025-08-12T20:02:23.000Z (11 months ago)
• Last Synced: 2025-08-15T12:01:58.773Z (11 months ago)
• Topics: data-science, modeling, r, r-package, toxicology
• Language: R
• Homepage: https://toxpi.github.io/toxpiR/index.html
• Size: 15.2 MB
• Stars: 11
• Watchers: 2
• Forks: 4
• Open Issues: 7
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE.md

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README

          
# toxpiR 

  [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)

  [![R-CMD-check](https://github.com/ToxPi/toxpiR/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ToxPi/toxpiR/actions/workflows/R-CMD-check.yaml)

  [![cran-version](https://www.r-pkg.org/badges/version-last-release/toxpiR?color=blue)](https://cran.r-project.org/web/packages/toxpiR/index.html)

  [![downloads](https://cranlogs.r-pkg.org/badges/grand-total/toxpiR)](https://cranlogs.r-pkg.org/badges/grand-total/toxpiR)

  [![codecov](https://codecov.io/gh/ToxPi/toxpiR/branch/main/graph/badge.svg?token=7yocvT0KzZ)](https://codecov.io/gh/ToxPi/toxpiR)

R package for the Toxicological Priority Index (ToxPi) prioritization algorithm. 

Package developed and maintained by the [Reif Lab](http://reif-lab.org). 

### Installation

Current stable release (CRAN):

```r

install.packages("toxpiR")

```

Current stable release (Build from GitHub):

```r

remotes::install_github("ToxPi/toxpiR", 

                        dependencies = TRUE)

                        

Note: Users may need to ensure "remotes" package and packages

requiring "BiocManager" are installed before building package.

if (!require(remotes)) install.packages("remotes")

if (!require(BiocManager, quietly = TRUE)) {

  install.packages("BiocManager")

}

BiocManager::install(c("S4Vectors","BiocGenerics"))

```

Current stable release (Build from GitHub with vignettes):

```r

remotes::install_github("ToxPi/toxpiR",

                        dependencies = TRUE, 

                        build_vignettes = TRUE)

Note: Building packages with vignettes requires the package

"pandoc" to be installed.

```