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https://github.com/tsmbland/parameter-space-2d
Tools for performing 2D parameter space analysis for deterministic models
https://github.com/tsmbland/parameter-space-2d
modeling parallel-computing python
Last synced: 10 days ago
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Tools for performing 2D parameter space analysis for deterministic models
- Host: GitHub
- URL: https://github.com/tsmbland/parameter-space-2d
- Owner: tsmbland
- License: cc-by-4.0
- Created: 2023-01-23T16:41:12.000Z (almost 2 years ago)
- Default Branch: master
- Last Pushed: 2023-08-09T14:19:09.000Z (over 1 year ago)
- Last Synced: 2024-12-06T02:05:39.500Z (28 days ago)
- Topics: modeling, parallel-computing, python
- Language: Python
- Homepage:
- Size: 1.22 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# parameter-space-2d
[![CC BY 4.0][cc-by-shield]][cc-by]
[![Black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
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[![PyPi version](https://badgen.net/pypi/v/parameter-space-2d/)](https://pypi.org/project/parameter-space-2d)
Tools for performing 2D parameter space analysis for deterministic models
## Method
Parameter space maps are built up by performing an iterative grid search, preferentially exploring parameter regimes
close to detected boundaries. Various checks are in place to ensure that any detected boundaries are fully explored.
_Example of a model with two states (blue and orange) and variable input parameters β and ε_
## Installation
pip install parameter-space-2d
## Instructions
The repository contains a couple of notebooks with instructions for performing analysis, using the Goehring et al. (2011) PAR polarity model as an example. To run the notebooks interactively, click here:
## License
This work is licensed under a
[Creative Commons Attribution 4.0 International License][cc-by].[![CC BY 4.0][cc-by-image]][cc-by]
[cc-by]: http://creativecommons.org/licenses/by/4.0/
[cc-by-image]: https://i.creativecommons.org/l/by/4.0/88x31.png
[cc-by-shield]: https://img.shields.io/badge/License-CC%20BY%204.0-lightgrey.svg