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https://github.com/underwatervideo/awesome-image-tools

A community driven list of useful tools for marine image and video analysis
https://github.com/underwatervideo/awesome-image-tools

List: awesome-image-tools

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A community driven list of useful tools for marine image and video analysis

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# awesome-image-tools
A community driven list of useful tools for marine image and video analysis.

## Slack

To contact fellow scientists working on image and video analysis, you can join our community at . Send a request to _brian at mbari dot org_ for an invitation.

## Table of Contents

- [Projects](#projects)
- [Identification](#identification)
- [Image Annotation](#image-annotation)
- [Miscellaneous](#miscellaneous)
- [Training Sets](#training-sets)
- [Video Annotation](#video-annotation)

## Identification

- [Encyclopedia of Life](https://eol.org/)
- [MBARI Deep-Sea Guide](http://dsg.mbari.org)
- [Tree of Life](http://tolweb.org)
- [World Register of Marine Species (WoRMS)](http://www.marinespecies.org/)


## Image Annotation

| Name | Free | Open Source | Notes |
| -- | -- | -- | -- |
| [BenthoBox](https://benthobox.com) | ✅ | ❌ | |
| [BIIGLE](https://www.biigle.de/) | ✅ | ✅ | |
| [Coral Point Count with Excel extensions](https://cnso.nova.edu/cpce/index.html) | ✅ | ❌ | |
| [CoralNet](https://coralnet.ucsd.edu/) | ✅ | ❌ | |
| [cvat](https://github.com/opencv/cvat) | ✅ | ✅ | |
| [Deep Sea Spy](https://www.deepseaspy.com) | ❌ | ❌ | |
| [Labelbox](https://labelbox.com/) | ❌ | ❌ | |
| [labelme](https://github.com/wkentaro/labelme) | ✅ | ✅ | |
| [OFOP](http://www.ofop-by-sams.eu/) | ❌ | ❌ | |
| [RectLabel](https://rectlabel.com/) | ❌ | ❌ | |
| [SeaGIS](https://www.seagis.com.au/) | ❌ | ❌ | Includes [EventMeasure](https://www.seagis.com.au/event.html) and [TransectMeasure](https://www.seagis.com.au/transect.html) |
| [Sebastes](https://repository.library.noaa.gov/view/noaa/11999/noaa_11999_DS1.pdf?) | ✅ | ✅ | |
| [Squidle+](http://squidle.org/) | ✅ | ✅ | [Source Code](https://bitbucket.org/ariell/marinedb) |
| [Supervisely](https://supervise.ly/) | ❌ | ❌ | |
| [Tator](https://www.tator.io/) | ✅ | ✅ | See: [Tutorials](https://www.tator.io/tutorials) and [Source Code](https://github.com/cvisionai/Tator) |
| [TagLab](https://github.com/cnr-isti-vclab/TagLab/) | ✅ | ✅ |
| [VIAME](http://www.viametoolkit.org/) | ✅ | ✅ | [All Docs](https://viame.readthedocs.io/en/latest/section_links/documentation_overview.html) |
| [VoTT](https://github.com/Microsoft/VoTT) | ✅ | ✅ |
| [FishID](https://globalwetlandsproject.org/tools-2/fishid/) | ✅ | 🔜 | Send an email to [email protected] to access and collaborate |

## Miscellaneous

| Name | Free | Open Source | Notes |
| -- | -- | -- | -- |
| [3D Metrics](https://3d-metrics.com/) | ❌ | ❌ | |
| [Cthulhu](https://github.com/mbari-media-management/cthulhu) | ❌ | ❌ | Video Player with Remote Control API that supports localizations |
| [iNaturalist](https://www.inaturalist.org/) | ✅ | ❌ | |
| [Matisse](https://www.eso.org/sci/facilities/develop/instruments/matisse.html) | ❌ | ❌ | |
| [OpenCV](https://opencv.org/) | ✅ | ✅ | |
| [Sharktopoda](https://github.com/mbari-org/Sharktopoda) | ✅ | ✅ | Video Player with Remote Control API. Supports creating and editing bounding boxes on video |
| [Sharktopoda 1](https://github.com/mbari-media-management/Sharktopoda) | ✅ | ✅ | Video Player with Remote Control API |
| [FishIDTrackers](https://github.com/slopezmarcano/automated-fish-tracking) | ✅ | ✅ | Fish detection and tracking pipelines with demo datasets |

## Training Sets

- [FathomNet](http://fathomnet.org)
- [Fishnet.AI](https://www.fishnet.ai/])
- [FishIDLowViz](https://github.com/slopezmarcano/dataset-fish-detection-low-visibility)
- [FishIDLuderick](https://github.com/globalwetlands/luderick-seagrass)
- [DeepFish](https://alzayats.github.io/DeepFish/)
- [VIAME](https://viame.kitware.com)

## Video Annotation

| Name | Free | Open Source | Notes |
| -- | -- | --| -- |
| [ADELIE](https://www.flotteoceanographique.fr/La-Flotte/Logiciels-embarques/ADELIE) | ✅ | ❌ | |
| [BIIGLE](https://www.biigle.de/) | ✅ | ✅ | |
| [Digital Fisher](https://www.oceannetworks.ca/learning/get-involved/citizen-science/digital-fishers) | ❌ | ❌ | |
| [MBARI Media Managment (M3/VARS)](https://mbari-media-management.github.io/) | ✅ | ✅ | [Quickstart](https://github.com/mbari-media-management/m3-quickstart) |
| [Scalabel](https://www.scalabel.ai/) | ✅ | ✅ | |
| [SeaTube](http://dmas.uvic.ca/SeaTube) | ✅ | ❌ | |
| [Tator](https://www.tator.io/) | ✅ | ✅ | See: [Tutorials](https://www.tator.io/tutorials) and [Source Code](https://github.com/cvisionai/Tator) |
| [Video Annotation and Reference System (VARS)](https://hohonuuli.github.io/vars/) | ✅ | ✅ | |
| [video-annotation-tool](https://github.com/video-annotation-project/video-annotation-tool) | ✅ | ✅ | |
| [VIAME](http://www.viametoolkit.org/) | ✅ | ✅ | [All Docs](https://viame.readthedocs.io/en/latest/section_links/documentation_overview.html) |
| [FishID](https://globalwetlandsproject.org/tools-2/fishid/) | ✅ | 🔜 | Send an email to [email protected] to access and collaborate |