https://github.com/unipept/unipept
🌐 Unipept frontend for metaproteomics data analysis
https://github.com/unipept/unipept
data-analysis data-visualization metaproteomics unipept uniprot
Last synced: about 14 hours ago
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🌐 Unipept frontend for metaproteomics data analysis
- Host: GitHub
- URL: https://github.com/unipept/unipept
- Owner: unipept
- License: mit
- Created: 2014-06-04T15:17:25.000Z (over 11 years ago)
- Default Branch: develop
- Last Pushed: 2025-08-18T11:28:03.000Z (5 months ago)
- Last Synced: 2025-08-18T13:15:52.513Z (5 months ago)
- Topics: data-analysis, data-visualization, metaproteomics, unipept, uniprot
- Language: Vue
- Homepage: https://unipept.ugent.be
- Size: 123 MB
- Stars: 24
- Watchers: 5
- Forks: 4
- Open Issues: 22
-
Metadata Files:
- Readme: README.md
- License: LICENSE.md
Awesome Lists containing this project
README
# Unipept
The [Unipept web application](http://unipept.ugent.be) supports biodiversity and functional analysis of large and complex metaproteome samples and the analysis of peptidomes.
The 6.0 release of Unipept brings support for non-tryptic peptides and the novel Peptonizer analysis pipeline to the tool.
An [API](https://unipept.ugent.be/apidocs) and [command line tool](http://github.com/unipept/unipept-cli) are available
for integration in other programs.
## Contributing
Found a bug or have an idea for an awesome new feature?
File an issue using the github [issue tracker](https://github.com/unipept/unipept/issues) or drop us a line at [unipept@ugent.be](mailto:unipept@ugent.be).
If you're willing to get your hands dirty, you might of course also send us a pull request!
## Installation
This repository contains the source code for the Unipept web application.
To run this application locally, you need to have **Node.js** and **Yarn** installed.
1. Clone the repository:
```bash
git clone https://github.com/unipept/unipept.git
cd unipept
```
2. Install dependencies:
```bash
yarn install
```
3. Start the development server:
```bash
yarn dev
```
The application will be available at `http://localhost:3000`.
### Custom Unipept Instance
This repository only contains the code for the web application of Unipept. To run a fully functional custom version of Unipept (with your own data), you also need to set up:
* The **Unipept Database**
* The **Unipept API**
We have detailed guides on how to set up all of these components on our Wiki:
[https://github.com/unipept/unipept/wiki](https://github.com/unipept/unipept/wiki)
## Who made this app?
Unipept is a research project of the computational biology group at Ghent University. If you use this application, please cite:
- Vande Moortele et al. (2025) J. Proteome Res. [doi.org:10.1021/acs.jproteome.4c00848](https://doi.org/10.1021/acs.jproteome.4c00848)
- Verschaffelt et al. (2023) J. Proteome Res. [doi:10.1021/acs.jproteome.3c00091](doi.org/10.1021/acs.jproteome.3c00091)
- Verschaffelt et al. (2021) J. Proteome Res. [doi:10.1021/acs.jproteome.0c00855](doi.org/10.1021/acs.jproteome.0c00855)
- Verschaffelt et al. (2020) Bioinformatics [doi:10.1093/bioinformatics/btaa553](doi.org/10.1093/bioinformatics/btaa553)
- Gurdeep Singh et al. (2019) J. Proteome Res. [doi:10.1021/acs.jproteome.8b00716](https://doi.org/10.1021/acs.jproteome.8b00716)
- Mesuere et al. (2018) J. Proteomics [doi:10.1016/j.jprot.2017.05.022](https://doi.org/10.1016/j.jprot.2017.05.022)
- Mesuere et al. (2016) Proteomics [doi:10.1002/pmic.201600023](https://doi.org/10.1002/pmic.201600023)
- Mesuere et al. (2016) Bioinformatics [doi:10.1093/bioinformatics/btw039](https://doi.org/10.1093/bioinformatics/btw039)
- Mesuere et al. (2015) Proteomics [doi:10.1002/pmic.201400361](https://doi.org/10.1002/pmic.201400361)
- Mesuere et al. (2012) J. Proteome Res. [doi:10.1021/pr300576s](https://doi.org/10.1021/pr300576s)
Current team:
- Bart Mesuere ([@bmesuere](https://github.com/bmesuere)): Group leader and PhD supervisor, Unipept founder
- Pieter Verschaffelt ([@pverscha](https://github.com/pverscha)): Postdoc and lead developer
- Tibo Vande Moortele ([@tibvdm](https://github.com/tibvdm)): PhD student
- Simon Van de Vyver ([@SimonVandeVyver](https://github.com/SimonVandeVyver)): PhD student
- Ben-Björn Binke ([@benbnk](https://github.com/benbnk)): PhD student
- Peter Dawyndt ([@pdawyndt](https://github.com/pdawyndt)): Group leader and PhD supervisor
Other contributions from:
- Felix Van der Jeugt ([@ninewise](https://github.com/ninewise)): Master's student 2014 - 2016 and PhD student 2016 - 2022
- Robbert Gurdeep Singh ([@beardhatcode](https://github.com/beardhatcode)): Developer 2017-2018
- Tom Naessens ([@silox](https://github.com/silox)): Master's student 2014-2015
- Toon Willems ([@nudded](https://github.com/nudded)): Master's student 2013-2014
- Ewan Higgs ([@ehiggs](https://github.com/ehiggs)): Ghent University HPC team
- Peter Vandamme: PhD co-supervisor of Bart
- Bart Devreese: PhD co-supervisor of Bart
For code contributions, the [contributors graph](https://github.com/unipept/unipept/graphs/contributors) is the place to be.