https://github.com/veupathdb/cbil

https://github.com/veupathdb/cbil

Last synced: 5 months ago
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• Host: GitHub
• URL: https://github.com/veupathdb/cbil
• Owner: VEuPathDB
• License: apache-2.0
• Created: 2019-06-20T19:11:30.000Z (about 7 years ago)
• Default Branch: master
• Last Pushed: 2025-12-13T20:09:11.000Z (6 months ago)
• Last Synced: 2025-12-15T15:24:07.484Z (6 months ago)
• Language: Perl
• Homepage:
• Size: 14.2 MB
• Stars: 0
• Watchers: 25
• Forks: 3
• Open Issues: 1
• Metadata Files:
  • Readme: README.org
  • License: LICENSE

Awesome Lists containing this project

README

          
* CBIL

  This repository is a shared resource created by the [[https://www.cbil.upenn.edu/][Computational Biology and Informatics Laboratory (CBIL)]] in Penn's Institute for Biomedical Informatics.  It contains a variety of scripts and packages for bioinformatics applications and other general purpose code.

** Dependencies

   + yarn / npm / ant

   + environment variables for GUS_HOME and PROJECT_HOME

   + Internal Dependencies

     + [[https://github.com/VEuPathDB/install][install]]

** Installation instructions.

   + bld CBIL

** Manifest

   + Bio :: library of value objects for biologically meaningful entities and file types.  deprecated in favor of Bioperl.

   + Cider :: set of packages that help generate a website with using page body parts, a navbar, and a configurable look-and-feel.  

   + CSP :: CBIL Style Police (CSP) is a Perl package for generating HTML pages and forms in a principled manner.   

   + HQ :: library of value objects used when computing hierarchical entropy values

   + ISA :: readers and library of value objects for [[https://isa-specs.readthedocs.io/en/latest/isatab.html][ISA-Tab]] Format

   + StudyAssayResults :: Modules for analyzing expression data (Microarray and RNASeq) and other data types.  

   + Util :: Helper modules for a variety of tasks