https://github.com/virtool/workflow-build-index
A workflow for building Virtool reference indexes
https://github.com/virtool/workflow-build-index
virtool workflow
Last synced: about 2 months ago
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A workflow for building Virtool reference indexes
- Host: GitHub
- URL: https://github.com/virtool/workflow-build-index
- Owner: virtool
- Created: 2020-11-17T19:34:48.000Z (over 5 years ago)
- Default Branch: main
- Last Pushed: 2026-04-27T21:17:09.000Z (2 months ago)
- Last Synced: 2026-04-27T23:13:55.808Z (2 months ago)
- Topics: virtool, workflow
- Language: Python
- Homepage:
- Size: 656 KB
- Stars: 1
- Watchers: 2
- Forks: 4
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Codeowners: .github/CODEOWNERS
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README
# workflow-build-index
A workflow for building Virtool reference indexes.
## Steps
1. Build index of default isolates using `bowtie2-build`.
2. Compress FASTA file.
3. Upload FASTA and Bowtie2 index files to server.
4. Finalize the index resource, which allows it to be used in analysis workflows.
## Contributing
### Unit Tests
#### Virtual Environment
```shell script
poetry install
poetry run pytest
```