https://github.com/vmikk/phylotwin
PhyloTwin
https://github.com/vmikk/phylotwin
Last synced: about 2 months ago
JSON representation
PhyloTwin
- Host: GitHub
- URL: https://github.com/vmikk/phylotwin
- Owner: vmikk
- License: mit
- Created: 2024-12-13T11:19:52.000Z (5 months ago)
- Default Branch: main
- Last Pushed: 2025-03-15T09:01:23.000Z (2 months ago)
- Last Synced: 2025-03-15T10:18:37.740Z (2 months ago)
- Language: R
- Homepage:
- Size: 43.5 MB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# PhyloTwin - Diversity estimation pipeline
PhyloTwin is an automated pipeline for the analysis of phylogenetic diversity using GBIF occurrence data.
It is a successor of [**PhyloNext**](https://phylonext.github.io/) with significantly improved performance and new features.
## Installation
```bash
nextflow pull vmikk/phylotwin -r main
```
## Funding
The software was developed as part of the [Prototype Biodiversity Digital Twin (BioDT)](https://biodt.eu/) project.
More information about the project can be found at [https://biodt.eu/use-cases/phylogenetic-diversity](https://biodt.eu/use-cases/phylogenetic-diversity).
## Citation
Mikryukov V, Abarenkov K, Jeppesen T, Schigel D, Frøslev T (2024). Prototype biodiversity digital twin: Phylogenetic diversity // Research Ideas and Outcomes, 10, e124988. https://doi.org/10.3897/rio.10.e124988
Mikryukov V, Abarenkov K, Laffan S, Robertson T, McTavish EJ, Jeppesen TS, Waller J, Blissett M, Kõljalg U, Miller JT (2024). PhyloNext: A pipeline for phylogenetic diversity analysis of GBIF-mediated data // BMC Ecology and Evolution, 24(1), 76. https://doi.org/10.1186/s12862-024-02256-9