https://github.com/waldronlab/curatedMetagenomicDataCuration
Sample Metadata Curation for curatedMetagenomicData
https://github.com/waldronlab/curatedMetagenomicDataCuration
Last synced: 4 months ago
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Sample Metadata Curation for curatedMetagenomicData
- Host: GitHub
- URL: https://github.com/waldronlab/curatedMetagenomicDataCuration
- Owner: waldronlab
- Created: 2017-06-23T13:03:23.000Z (almost 8 years ago)
- Default Branch: master
- Last Pushed: 2024-07-12T12:56:44.000Z (9 months ago)
- Last Synced: 2024-08-13T07:11:15.407Z (8 months ago)
- Language: R
- Homepage: https://waldronlab.io/curatedMetagenomicDataCuration/
- Size: 49.8 MB
- Stars: 28
- Watchers: 15
- Forks: 23
- Open Issues: 15
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
- jimsghstars - waldronlab/curatedMetagenomicDataCuration - Sample Metadata Curation for curatedMetagenomicData (R)
README
# Quick Start
This package checks metadata curation for curatedMetagenomicData. To use it:
1. Look at the [template](https://github.com/waldronlab/curatedMetagenomicDataCuration/blob/master/inst/extdata/template.csv) and [already curated files](https://github.com/waldronlab/curatedMetagenomicDataCuration/tree/master/inst/curated) to see what curated files should look like.
2. Place a tab-separated file ending in "_metadata.tsv" in a directory under inst/curation. Commit and create a pull
request. Or if you don't like git, use Github.com's ["Upload Files" button](https://github.com/waldronlab/curatedMetagenomicDataCuration/tree/master/inst/curated) to upload to create a pull request without the need to use git.
3. Does the new dataset pass all checks? It takes 3-4 minutes for the check to be completed (TODO: add overall badge)
4. See the [detailed syntax-checking report](https://waldronlab.io/curatedMetagenomicDataCuration/articles/curatedMetagenomicDataCuration.html).
If you don't want to wait for GitHub Actions to finish checking, you can check on your own computer:
```
BiocManager::install("waldronlab/curatedMetagenomicDataCuration", build_vignettes=TRUE)
browseVignettes("curatedMetagenomicDataCuration")
```
# More complete introduction
The complete reference for curators is provided at this page's [wiki](https://github.com/waldronlab/curatedMetagenomicDataCuration/wiki).