https://github.com/y9c/m5c-ubsseq
Ultrafast bisulfite
https://github.com/y9c/m5c-ubsseq
bioinformatics epitranscriptome epitranscriptomics rna
Last synced: 3 months ago
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Ultrafast bisulfite
- Host: GitHub
- URL: https://github.com/y9c/m5c-ubsseq
- Owner: y9c
- Created: 2023-01-15T02:57:59.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-01-09T21:29:14.000Z (over 1 year ago)
- Last Synced: 2024-01-09T22:33:10.392Z (over 1 year ago)
- Topics: bioinformatics, epitranscriptome, epitranscriptomics, rna
- Language: Python
- Homepage:
- Size: 20.5 KB
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
[](https://doi.org/10.5281/zenodo.11046885)
# m5C-UBSseq
## Changelog
- 4/23/2024: rewrite code using polars
## workflow
[](https://github.com/y9c/m5C-UBSseq)
## Citation
- cite this software
```BibTex
@software{chang_y_2024_11046885,
author = {Chang Y},
title = {y9c/m5C-UBSseq: V0.1},
publisher = {Zenodo},
version = {v0.1},
doi = {10.5281/zenodo.11046885},
url = {https://doi.org/10.5281/zenodo.11046885}
}
```- cite the method
```BibTex
@article{dai_ultrafast_2024,
title = {Ultrafast bisulfite sequencing detection of 5-methylcytosine in {DNA} and {RNA}},
url = {https://www.nature.com/articles/s41587-023-02034-w},
doi = {10.1038/s41587-023-02034-w},
author = {Dai, Qing and Ye, Chang and Irkliyenko, Iryna and Wang, Yiding and Sun, Hui-Lung and Gao, Yun and Liu, Yushuai and Beadell, Alana and Perea, José and Goel, Ajay and He, Chuan},
date = {2024-01-02},
}
```
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Copyright © 2021-present
Chang Y