https://github.com/y9c/m5c-ubsseq

Ultrafast bisulfite
https://github.com/y9c/m5c-ubsseq

bioinformatics epitranscriptome epitranscriptomics rna

Last synced: 3 months ago
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Ultrafast bisulfite

• Host: GitHub
• URL: https://github.com/y9c/m5c-ubsseq
• Owner: y9c
• Created: 2023-01-15T02:57:59.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2024-01-09T21:29:14.000Z (over 1 year ago)
• Last Synced: 2024-01-09T22:33:10.392Z (over 1 year ago)
• Topics: bioinformatics, epitranscriptome, epitranscriptomics, rna
• Language: Python
• Homepage:
• Size: 20.5 KB
• Stars: 0
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.11046885.svg)](https://doi.org/10.5281/zenodo.11046885)

# m5C-UBSseq

## Changelog

- 4/23/2024: rewrite code using polars

## workflow

[![](./docs/flow.svg)](https://github.com/y9c/m5C-UBSseq)

## Citation

- cite this software

  ```BibTex

  @software{chang_y_2024_11046885,

      author    = {Chang Y},

      title     = {y9c/m5C-UBSseq: V0.1},

      publisher = {Zenodo},

      version   = {v0.1},

      doi       = {10.5281/zenodo.11046885},

      url       = {https://doi.org/10.5281/zenodo.11046885}

  }

  ```

- cite the method

  ```BibTex

  @article{dai_ultrafast_2024,

      title = {Ultrafast bisulfite sequencing detection of 5-methylcytosine in {DNA} and {RNA}},

      url = {https://www.nature.com/articles/s41587-023-02034-w},

      doi = {10.1038/s41587-023-02034-w},

      author = {Dai, Qing and Ye, Chang and Irkliyenko, Iryna and Wang, Yiding and Sun, Hui-Lung and Gao, Yun and Liu, Yushuai and Beadell, Alana and Perea, José and Goel, Ajay and He, Chuan},

      date = {2024-01-02},

  }

  ```

 









Copyright © 2021-present

Chang Y