https://github.com/zdavatz/aips2sqlite

aips2sqlite - create an SQLite DB from AIPS, Swissmedic, BAG and Refdata
https://github.com/zdavatz/aips2sqlite

aips aips2sqlite bag java refdata sqlite swissmedic

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aips2sqlite - create an SQLite DB from AIPS, Swissmedic, BAG and Refdata

• Host: GitHub
• URL: https://github.com/zdavatz/aips2sqlite
• Owner: zdavatz
• Created: 2013-10-10T11:22:35.000Z (about 11 years ago)
• Default Branch: master
• Last Pushed: 2024-04-20T13:20:25.000Z (7 months ago)
• Last Synced: 2024-05-01T23:16:27.352Z (7 months ago)
• Topics: aips, aips2sqlite, bag, java, refdata, sqlite, swissmedic
• Language: Java
• Size: 299 MB
• Stars: 5
• Watchers: 4
• Forks: 5
• Open Issues: 2
• Metadata Files:
  • Readme: README.md

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README

        
aips2sqlite

===========

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aips2sqlite - creates an SQLite DB from AIPS, Swissmedic, BAG and Refdata

## Requirements

java version "1.8.0_92" (tested on Windows, Linux, Mac OS X)

## Build aips2sqlite.jar from commandline

`make aips2sqlite`

the output will be placed here: `build/libs`

## Clean the build folder

`make clean`

## Caveats

On some systems it may be necessary to increase the heap space with the Java option -Xmx, see below for an example.

## Options

```

--alpha=    generate sqlite database or xml file for meds whose title starts with 'char'

--help            print help

--indications     generate report about keywords found in section indications (folder output)

--inter			  generate drug interaction files as an sqlite database and a csv data file

--lang=      generate database with given language, two options are supported: 'de' and 'fr'

--nodown          do not download the aips, swissmedic, bag and refdata files

--owner=   generate sqlite database or xml file for meds whose holder starts with 'owner'

--pinfo           generate Patinfo (default is Fachinfo)

--quiet           be extra quiet

--regnr=  generate sqlite database or xml file for meds whose registration number starts with 'number'

--reports         generate parse and owner error reports (folder output)

--verbose         be extra verbose

--version         print the version information and exit

--xml             generate xml file 

--zip             generate zipped versions sqlite database or xml file 

```

## Examples

Generate German SQLite database including report file:

$ java -jar aips2sqlite.jar --lang=de --verbose --reports

Generate French SQLite database, do not download any files and be extra quiet:

$ java -jar aips2sqlite.jar --lang=fr --quiet --nodown

Generate zipped German database for all med titles starting with P including a parse and section indication reports:

$ java -jar aips2sqlite.jar --lang=de --alpha=P --verbose --reports --nodown --indications --zip

Generate zipped French database and xml file for meds with registration number starting with N

$ java -jar aips2sqlite.jar --lang=fr --xml --regnr=N --verbose --nodown --zip

To increase the heap space use the option -Xmx

$ java -jar -Xmx2048m aips2sqlite.jar --lang=de --verbose --reports