Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/WeiqiangZhou/BIRD
Big data Regression for predicting DNase I hypersensitivity
chromatin-accessibiity dnase-seq gene-expression prediction-model rna-seq single-cell-genomics
Last synced: 16 Jun 2024
https://github.com/SUwonglab/PECA
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
atac-seq chromatin-accessibiity dnase-seq gene-expression gene-regulatory-network rna-seq
Last synced: 24 May 2024
https://github.com/UcarLab/BiFET
A robust statistical test for TF footprint data analyses
atac-seq bioconductor chromatin-accessibiity dnase-seq footprinting r statistical-tests transcription-factor-binding
Last synced: 24 May 2024
https://github.com/macs3-project/MACS
MACS -- Model-based Analysis of ChIP-Seq
atac-seq chip-seq dnase-seq macs peak-caller poisson-equation python
Last synced: 24 May 2024
https://github.com/GreenleafLab/chromVAR
chromatin Variability Across Regions (of the genome!)
atac-seq bioinformatics dnase-seq r
Last synced: 24 May 2024
