Projects in Awesome Lists tagged with dnase-seq
A curated list of projects in awesome lists tagged with dnase-seq .
https://github.com/macs3-project/MACS
MACS -- Model-based Analysis of ChIP-Seq
atac-seq chip-seq dnase-seq macs peak-caller poisson-equation python
Last synced: 19 Apr 2025
https://github.com/kundajelab/atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
atac-seq bioinformatics-pipeline dnase-seq
Last synced: 27 Jan 2026
https://github.com/GreenleafLab/chromVAR
chromatin Variability Across Regions (of the genome!)
atac-seq bioinformatics dnase-seq r
Last synced: 10 May 2025
https://github.com/SUwonglab/PECA
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
atac-seq chromatin-accessibiity dnase-seq gene-expression gene-regulatory-network rna-seq
Last synced: 20 Nov 2025
https://github.com/slowkow/centipede.tutorial
:bug: How to use CENTIPEDE to determine if a transcription factor is bound.
bioinformatics dnase-seq enrichment rstats transcription-factors tutorial
Last synced: 14 Apr 2025
https://github.com/UcarLab/BiFET
A robust statistical test for TF footprint data analyses
atac-seq bioconductor chromatin-accessibiity dnase-seq footprinting r statistical-tests transcription-factor-binding
Last synced: 10 May 2025
https://github.com/danko-lab/dreg.hd
Refining TRE regions from dREG by imputing DHS.
Last synced: 16 Aug 2025
