https://github.com/zakariaaithssain/medgraphetl

ETL Pipeline Applying NER and RE to PubMed Cancer Articles, Normalizing Entities via UMLS API, and Representing the Extracted Data as A Graph Database.

cancer graphdb mongodb-atlas neo4j-aura ner pubmed-api re scispacy spacy umls-api

Last synced: 16 May 2026