https://github.com/bfssi-bioinformatics-lab/centreseq

Easily establish a core genome among bacterial strains

Last synced: 22 Mar 2025

https://github.com/bfssi-bioinformatics-lab/bmh_lims

Custom LIMS solution for the Bureau of Microbial Hazards

Last synced: 23 Jun 2025

https://github.com/bfssi-bioinformatics-lab/basemountretrieve

Package for retrieving files from BaseMount in the output style of a local MiSeq run

Last synced: 22 Mar 2025

https://github.com/bfssi-bioinformatics-lab/cchsnutritionviz2020

Last synced: 19 Mar 2026

https://github.com/bfssi-bioinformatics-lab/bfssi-bioinformatics-lab.github.io

Hosting for small projects made by the BFSSI bioinformatics lab.

Last synced: 19 Mar 2026

https://github.com/bfssi-bioinformatics-lab/vfdbquery

vfdbQuery is a simple script for querying an input genome assembly against the Virulence Factor Database (VFDB)

Last synced: 22 Mar 2025

https://github.com/bfssi-bioinformatics-lab/enterotyper

Scripts to type and compare assemblies based off of Enterobase schemes

Last synced: 21 Jun 2025

https://github.com/bfssi-bioinformatics-lab/prokaryoteassembly

Simple CLI assembly pipeline tuned for prokaryotes

Last synced: 19 May 2026

https://github.com/bfssi-bioinformatics-lab/hardcore-genome-suite

Last synced: 04 Aug 2025

https://github.com/bfssi-bioinformatics-lab/flaime

Web app for monitoring the online food landscape

Last synced: 11 Apr 2026

https://github.com/bfssi-bioinformatics-lab/pptm

Project Picture Taking Pilot

Last synced: 09 Mar 2025

https://github.com/bfssi-bioinformatics-lab/cqt_customer_query_tool

Last synced: 13 Apr 2026

https://github.com/bfssi-bioinformatics-lab/chhad-mailtrack

Mail Assistant

Last synced: 08 Apr 2025

https://github.com/bfssi-bioinformatics-lab/cchs-food-source-contribution

Food Source Contribution Tool

bootstrap d3 infobase javascript wet

Last synced: 14 Apr 2026

https://github.com/bfssi-bioinformatics-lab/bmh_sample_tracker

A sample tracking app for the Bureau of Microbial Hazards

Last synced: 06 May 2026

https://github.com/bfssi-bioinformatics-lab/miseq_portal

Internal web portal for analyzing and retrieving NGS data

Last synced: 10 May 2026

https://github.com/bfssi-bioinformatics-lab/bfssi-assembly-pipeline

Nextflow pipeline for assembling prokaryotic genomes

Last synced: 23 Jun 2025

https://github.com/bfssi-bioinformatics-lab/tds-dietary-exposure-tool

Total Diet Study Dietary Exposure Tool

Last synced: 19 May 2026

https://github.com/bfssi-bioinformatics-lab/bmh_minion_basecaller

Internal pipeline for prepping MinION runs for upload to the BMH genomics portal

Last synced: 22 Mar 2025

https://github.com/bfssi-bioinformatics-lab/seqpresenceabsence

Package for checking for the presence/absence of markers against a set of samples

Last synced: 22 Mar 2025

https://github.com/bfssi-bioinformatics-lab/nutrition_database

Last synced: 16 May 2026

https://github.com/bfssi-bioinformatics-lab/microorganism-dashboard-d3-fsdat

Food Surveillance Data Analytics Tool - Microbiology Dashboard

bootstrap5 d3 javascript

Last synced: 10 Apr 2026

https://github.com/bfssi-bioinformatics-lab/flaime-2.0

Last synced: 09 Apr 2026