https://github.com/bioinfomachinelearning/gcpnet

A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)

computational-biology deep-learning graph-neural-networks machine-learning

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/cryovirusdb

A dataset of labeled virus particles in cryo-EM micrographs (images) for training and testing machine learning methods of virus particle picking

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/enqa

A 3D-equivariant neural network for protein structure accuracy estimation

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/grnformer

Transformer models for predicting gene regulatory networks from omics data

Last synced: 04 Mar 2026

https://github.com/bioinfomachinelearning/multicom4

The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri - Columbia

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/multicom_ligand

Comprehensive ensembling of protein-ligand structure and affinity prediction methods (CASP16)

binding-affinity deep-learning diffusion-model drug-discovery flow-matching pose-prediction protein-ligand-interactions

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/dproq

Deep learning prediction of protein complex structure quality

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/cryo2strut2

The second version of Cryo2Struct for reconstructing protein structures from cryo-EM density maps

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/psbench

A large and comprehensive benchmark for estimating the accuracy of protein complex structural models

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/sersformer

Transformers for predicting food contamination

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/bml_hic_data_analysis

A set of tools for Hi-C data analysis developed by Bioinformatics and Machine Learning Lab

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/mintomics

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/funbench

The programs and data for benchmarking protein function site prediction methods

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/deepcryopicker

This is the python implementation of the original DeepCryoPicker for picking single protein particles in cryo-EM images.

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/tulip

Template-based modeling for accurate prediction of ligand-protein complex structures (TULIP)

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/jcvidb

A data repository for JCVI minimum cells

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/gd-multimer

Stochastic gradient descent method for reconstructing protein multimer structures from inter-chain contacts/distances

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/.github

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/dagmsa

DAGMSA: Direct Acyclic Graph-based Multiple Sequence Alignments (MSA) for Protein Multimer Structure Prediction

Last synced: 18 Feb 2026

https://github.com/bioinfomachinelearning/transpro

1D transformer for predicting protein structural features (secondary structure, solvent accessibility)

Last synced: 18 Feb 2026