Projects in Awesome Lists by Brody-Lab
A curated list of projects in awesome lists by Brody-Lab .
https://github.com/brody-lab/chronic_neuropixels
Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels recordings in unrestrained rats"
Last synced: 22 Apr 2025
https://github.com/brody-lab/pulseinputddm.jl
A Julia library for fitting DDMs to pulse-based evidence accumulations task data
drift-diffusion-model julialang neuroscience-methods
Last synced: 03 Jul 2025
https://github.com/brody-lab/jbreda_animal_training
Repository for the ingestion, cleaning and visualization of behavioral experiments
Last synced: 10 Oct 2025
https://github.com/brody-lab/depasquale-elife-2024
Data and analysis notebooks for DePasquale et. al eLife 2024
Last synced: 11 Jul 2025
https://github.com/brody-lab/flexible_decision_making_training
Training code for the rat flexible decision-making task
Last synced: 14 Oct 2025
https://github.com/brody-lab/findr
FINDR: Flow-field Inference from Neural Data using deep Recurrent networks
latent-variable-models neural-differential-equations neuroscience
Last synced: 13 Jul 2025
https://github.com/brody-lab/dynamic_ephys
Code for analysis for ephys data on the dynamic clicks accumulation task
Last synced: 02 Apr 2025
https://github.com/brody-lab/adrian_striatum_analysis
code for wrangling and organizing striatum ephys recordings and associated GLM fits
Last synced: 02 Apr 2025
https://github.com/brody-lab/tzl_spglm
Generalized linear model of the spike train of individual neurons recorded in the Poisson Clicks task
Last synced: 16 Jan 2026
https://github.com/brody-lab/boydmeredith_training_report
GUI to monitor performance with training on PBups pipeline
Last synced: 04 Jul 2025
https://github.com/brody-lab/jbreda_kilosort
Pipeline that allows for tetrode recordings to be sorted in Kilosort
Last synced: 02 Apr 2025
https://github.com/brody-lab/proanti
Code repository for the Duan, Pagan, Piet et al. manuscript
Last synced: 27 Aug 2025
https://github.com/brody-lab/jbreda_pwm_mpfc_analysis
repository for analysis of PWM ephys data
Last synced: 02 Apr 2025
https://github.com/brody-lab/rnn_linearization
Code about linearization of RNNs
Last synced: 23 Feb 2026
https://github.com/brody-lab/bpod_public
Bpod firmware, hardware, and software for public sharing
Last synced: 09 Oct 2025
https://github.com/brody-lab/bl_pipeline_python
Python Data pipeline for BrodyLab
Last synced: 29 Jan 2026
https://github.com/brody-lab/mouse_npx_holders
3D files for chronic neuropixel holders modified by Jesse Kaminsky and Jorge Yanar from holders in Luo, Bondy et al. 2020.
Last synced: 11 Jan 2026
https://github.com/brody-lab/decision_dynamics_commitment
Code and data accompanying: Luo*, Kim*, et al. (2025). Transitions in dynamical regime and neural mode underlie perceptual decision-making. PMID: 37904994
Last synced: 08 May 2025
https://github.com/brody-lab/labwide_princeton_covid_dashboard
plots of the Princeton COVID Dashboad
Last synced: 11 Aug 2025
https://github.com/brody-lab/trialhistory_lapses_ea
This repository contains code for generating figures for the manuscript "Trial-history biases in evidence accumulation can give rise to apparent lapses"
Last synced: 31 Dec 2025
https://github.com/brody-lab/zyazdani_tb_analysis_turing
Logistic regression model of frozen_noise using the Turing package
Last synced: 12 Jan 2026
https://github.com/brody-lab/neu_437_public
Public-facing repository for NEU 437 problem sets. Includes python notebooks (without answers) and associated data.
Last synced: 03 Aug 2025