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Projects in Awesome Lists by EmbryoPhenomics

A curated list of projects in awesome lists by EmbryoPhenomics .

https://github.com/embryophenomics/vuba

An easy to use library for constructing OpenCV HighGUI interfaces.

computer-vision image-processing opencv python

Last synced: 15 Oct 2024

https://github.com/embryophenomics/embryo_segmentation

Models, weights and scripts for semantic segmentation of embryos in microscopy images. Including popular CNNs such as UNet, PSPnet and DeepLabV3.

Last synced: 05 Nov 2024

https://github.com/embryophenomics/embryocv_data_view

A little interactive app for visualising individual level phenome data from EmbryoCV.

Last synced: 05 Nov 2024

https://github.com/embryophenomics/labembryocam

Hardware and software for building and running a LabEmbryoCam system for phenotyping aquatic embryos

Last synced: 05 Nov 2024

https://github.com/embryophenomics/fast_img_compile

Parallel processing script for concatenating image sequences into AVI videos, specifically for MicroManager acquisitions.

Last synced: 05 Nov 2024

https://github.com/embryophenomics/egg_detection

Egg detection in microscopy images using 2D ConvNets. Weights currently available for Lymnaea stagnalis.

Last synced: 05 Nov 2024

https://github.com/embryophenomics/dev-resnet

3D ConvNet for automating the detection of developmental events. Weights, training and inference scripts are included.

Last synced: 05 Nov 2024

https://github.com/embryophenomics/heartcv

Software for automated quantification of cardiac traits from video of transparent animals.

Last synced: 05 Nov 2024

https://github.com/embryophenomics/vimbapy

Helper/convenience functions for interfacing with pymba and VimbaPython.

Last synced: 05 Nov 2024

https://github.com/embryophenomics/fieldep_hardware

CAD files and build guides for FieldEP hardware.

Last synced: 05 Nov 2024

https://github.com/embryophenomics/eptr

R code used in the analysis and visualisation of EPT datasets.

Last synced: 05 Nov 2024