Projects in Awesome Lists by ScilifelabDataCentre
A curated list of projects in awesome lists by ScilifelabDataCentre .
https://github.com/scilifelabdatacentre/pathogens-portal
Swedish pathogens portal
bootstrap covid-19 hugo markdown
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/publications
A web-based publications reference database system.
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/dds_web
A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/orderportal
A portal for orders (requests, project applications, etc) to a facility from its users.
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/dds_cli
The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/serve-tutorials
Tutorials for running applications on Scilifelab Serve.
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/rdm-guidelines
This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/serve
SciLifeLab Serve is a platform offering machine learning model serving, data science app hosting (Shiny, Gradio, Streamlit, Dash, etc.), and other tools to life science researchers affiliated with a Swedish research institute.
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/dds_workshop
Documentation for the DDS Workshop (Autumn 2024)
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/dbshare
Web service to share and query tabular data sets stored in SQLite3 databases.
Last synced: 16 Nov 2024
https://github.com/scilifelabdatacentre/pathogens-portal-visualisations
This repository holds the visualisations produced for the Swedish Pathogens Portal
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/blobserver
Simple web app to server blobs (files containing any data) publicly. A file can be uploaded or updated by an authorized account, either via the web interface or via a script.
Last synced: 13 Apr 2025
https://github.com/scilifelabdatacentre/datagraphics
Post datasets and graphics on the web using Vega-Lite graphics.
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/reference-files
Files to use as reference for e.g. Dockerfiles and Github workflows
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/annual_report_bibliometry
This is where the bibliometrics scripts for the annual report will be held. The intention will be to have a folder dedicated to scripts from each year if need be. However, the scripts should be standardised as much as possible for use in each year
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/anubis
Proposal submission and review handling system.
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/scilifelabdatacentre.github.io
GH Pages for a workshop organized by DC
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/data.scilifelab.se
SciLifeLab Data Platform
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/pathogens-portal-scripts
This repository holds the scripts produced for the Swedish Pathogens Portal
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/serve-charts
SciLifeLab Serve charts repository
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/precision-medicine-portal-frontend
React project for the frontend of the Precision Medicine Portal by DC Data Science Node
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/serve-images
All files related to images used in Serve
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/serve-event-listener
This repository contains the code for the serve event listener functionality
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/serve-load-testing
Load testing for SciLifeLab Serve using the Python Locust library.
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/dash-covid-in-sweden
Dashboard showing the impact of COVID-19 in Sweden: number of cases, admissions to ICU, and deaths.
covid-19 dash data-visualization plotly-dash
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/gradio-flower-classification
Web app that allows users to input an image of a flower and get a prediction on what type of flower it is from a machine learning model.
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/web_publication_dashboard
A dashboard for showing publication visualisations in a browser
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/shiny-adhd-medication-sweden
Dashboard visualising ADHD medication collection among girls and boys (0-19 year olds) in Sweden over time.
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/dsw-appendix
A static site which provides extra documentation for users of the main DSW system
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/node-pathogens-portal-theme
Hugo theme for pathogens portal
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/forwarder
Simple system for url forwarding
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/oidc-demo
Simple Flask server using OpenID Connect for login
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/annual-report-2021
This repository will contain the scripts required to produce the bibliometric analyses from the 2021 annual report
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/maintenance-page
Simple maintenance page running nginx in a Docker container
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/genome-portal
This is the repository for the Swedish Reference Genome Portal, a platform facilitating access and discovery of genome data of non-model eukaryotic species studied in Sweden
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/development-guidelines
Guidelines for the SciLifeLab Data Centre development team.
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/scilifelab-data-repository-das
Data Access Statement generator for the SciLifeLab Data Repository for proof of concept. This is a part of ongoing work on data access statements for the SciLifeLab Data Repository.
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/bibliometrics-annual-report
This repository holds the python scripts to create the bibliometrics analysis completed for the annual report 2020
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/dc-bot
A simple app/bot for the SciLifeLab Slack
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/dsw-issues
Issue management for dsw-test.scilifelab.se
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/node-pathogens-portal-demo
A repo to have deployment related stuff for node-pathogens-portal demo site
Last synced: 27 Mar 2025
https://github.com/scilifelabdatacentre/infra_one_pagers
Repository for one-pagers related to infrastructure units
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/iab_reports
Repository with all information about IAB reports from 2023
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/sftp-geesefs-butane
Butane configuration for a Fedora CoreOS SFTP server using S3 buckets mounted by geesefs
butane fedora-coreos geesefs openssh s3 sftp sftp-server
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/biobank-forms
Simple system to collect data about biobank entries
Last synced: 24 Jan 2025
https://github.com/scilifelabdatacentre/keywords-vos
A simple website to show keywords occurence
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/scilifelab-data-repository-api-examples
Collection of example scripts for interacting with the SciLifeLab Data Repository (https://scilifelab.figshare.com) using the API.
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/precision-medicine-portal-charts
Helm charts for the Precision Medicine Portal
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/unusued_vis
This repository contains scripts related to visualisations that are not currently in use, but could become useful in the future. If they are used, then they should be moved to the appropriate repository
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/streamlit-image-to-smiles
Web app that allows users to predict SMILES for chemical structures depicted in images files.
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/pyjb
Jupyter widgets for the JBrowse2 genome browser
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/covid-sample-collection-database
The Swedish COVID-19 Sample Collection Database, part of the COVID-19 Data Portal Sweden
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/iab_2021
This will be the repository for the scripts developed for use in the IAB 2021 report
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/iec_reports
This repository contains all of the scripts created for the IEC reports. There is a folder for the work completed in each year
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/form-manager
A simple system for receiving form submissions.
flask mongodb python quasar-framework vue
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/node-pathogens-portal
A minimal/example hugo site for node pathogens portal. Checkout the demo site following the URL below
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/helm-charts
Helm charts for our deployments
Last synced: 18 Mar 2025
https://github.com/scilifelabdatacentre/scilifelab-data-guidelines
SciLifeLab Data Guidelines
Last synced: 18 Mar 2025