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Projects in Awesome Lists by djinnome
A curated list of projects in awesome lists by djinnome .
https://github.com/djinnome/rxneqn
This is code to support the computation of stoichiometric equations for the Thermodynamic Electon Equivalents Model (TEEM) developed by Rittman and McCarty.
biochemistry bioinformatics chemical-reaction-balancing stoichiometric-reactions stoichiometry thermodynamics
Last synced: 03 Jan 2025
https://github.com/djinnome/mentos
Maximum Entropy production Of the Stoichiometric matrix
Last synced: 03 Jan 2025
https://github.com/djinnome/y0-blog
Reflections of a computational biologist navigating a causal universe
Last synced: 03 Jan 2025
https://github.com/djinnome/rhtocyc-kb
Rhodosporidium toruloides Pathway/Genome Database
Last synced: 03 Jan 2025
https://github.com/djinnome/neurospora_crassa
Genome-scale metabolic model for filamentous fungus Neurospora crassa
Last synced: 03 Jan 2025
https://github.com/djinnome/apegcyc-kb
Aspergillus pseudoterreus Pathway/Genome Database
Last synced: 03 Jan 2025
https://github.com/djinnome/yeastcyc
Saccharomyces cerevisae Pathway/Genome database updated with links to Yarrowia
Last synced: 03 Jan 2025
https://github.com/djinnome/aracyc
Arabidopsis pathway/genome database v15.0
Last synced: 03 Jan 2025
https://github.com/djinnome/pflu216595cyc
Pseudomonas fluorescens SBW25 PFLU216595
Last synced: 03 Jan 2025
https://github.com/djinnome/fluxobservabilityanalysis
Based on Crown & Antoniewicz, 2012
Last synced: 03 Jan 2025
https://github.com/djinnome/fast-automated-recon-metabolism
Automatically exported from code.google.com/p/fast-automated-recon-metabolism
Last synced: 03 Jan 2025
https://github.com/djinnome/apeg_pnnlcyc-kb
Aspergillus pseudoterreus (PNNL) Pathway/Genome Database
Last synced: 03 Jan 2025
https://github.com/djinnome/chlamycyc
PGDB for Chlamydomonas reinhardtii . (metabolism only)
Last synced: 03 Jan 2025
https://github.com/djinnome/pyopt
This is a fork of pyOpt at http://pyopt.org
Last synced: 03 Jan 2025
https://github.com/djinnome/metaboliteproducibility
Metabolite producibility analysis as described in Imielinski 2005 and 2008
Last synced: 03 Jan 2025
https://github.com/djinnome/abc-model-mentos
MENTOS applied to the ABC Model
Last synced: 03 Jan 2025
https://github.com/djinnome/biohacker
Automatically exported from code.google.com/p/biohacker
Last synced: 03 Jan 2025
https://github.com/djinnome/neurosporaglucosecompensation
Based on the Hong et al model, we explore the effect of the clock on metabolism and metabolism on the clock
Last synced: 03 Jan 2025
https://github.com/djinnome/p_putida_kt2440
Model repository for Pseudomonas putida KT2440 and strains developed by AgileBioFoundry
Last synced: 03 Jan 2025
https://github.com/djinnome/caid01cyc
Genbank version of Ostreococcus tauri
Last synced: 03 Jan 2025
https://github.com/djinnome/2017-05-04-pnnl
Lead instructor for Software carpentry workshop at Pacific Northwest National Laboratory
carpentry learners lesson swc swc-site workshop-website
Last synced: 03 Jan 2025
https://github.com/djinnome/genbank_to_fasta
Converter for Genbank to FASTA files
Last synced: 03 Jan 2025
https://github.com/djinnome/2017-12-18-pnnl
Unix, Python, and Git Software Carpentry @ PNNL December 18-19, 2017
Last synced: 03 Jan 2025
https://github.com/djinnome/sone211586cyc
Shewanella oneidensis MR-1 Pathway/Genome database
Last synced: 03 Jan 2025