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Projects in Awesome Lists by iskandr

A curated list of projects in awesome lists by iskandr .

https://github.com/iskandr/fancyimpute

Multivariate imputation and matrix completion algorithms implemented in Python

Last synced: 19 Dec 2024

https://github.com/iskandr/parakeet

Runtime compiler for numerical Python

Last synced: 23 Dec 2024

https://github.com/iskandr/bcb731

Defense Against the Dark Arts

Last synced: 07 Nov 2024

https://github.com/iskandr/ocaml_llvm

Toy compiler for OCaml Meetup

Last synced: 07 Nov 2024

https://github.com/iskandr/moving_pictures

Create a movie from a sequence of images in Python (uses PIL and ffmpeg)

Last synced: 07 Nov 2024

https://github.com/iskandr/knnimpute

Python implementations of kNN imputation

imputation machine-learning missing-data statistics

Last synced: 07 Nov 2024

https://github.com/iskandr/striate

Convolutional Neural Networks in Python

Last synced: 14 Oct 2024

https://github.com/iskandr/shiver

A multi-threaded work queue for LLVM functions

Last synced: 14 Oct 2024

https://github.com/iskandr/dsltools

Helpers for DSL construction in Python

Last synced: 14 Oct 2024

https://github.com/iskandr/genepool

Framework for writing evolutionary optimization algorithms in OCaml

Last synced: 14 Oct 2024

https://github.com/iskandr/texture_synthesis

Repetitive pretty pictures on demand

Last synced: 01 Dec 2024

https://github.com/iskandr/parakeet-retired

Parallelizing Runtime for Array Languages

Last synced: 14 Oct 2024

https://github.com/iskandr/arma

Estimating ARMA model parameters using stochastic gradient descent

Last synced: 14 Oct 2024

https://github.com/iskandr/immuno

Predicting immunogenicity of short peptides

Last synced: 01 Dec 2024

https://github.com/iskandr/adversarial-impute

Possibly ill-fated experimented with Generative Adversarial Imputation

Last synced: 01 Dec 2024

https://github.com/iskandr/censored_regression

Linear regression with lower-bound labels

Last synced: 01 Dec 2024

https://github.com/iskandr/deep-learning-for-bio

Deep Learning for Biology

Last synced: 01 Dec 2024

https://github.com/iskandr/mhcpred

MHC Binding Prediction

Last synced: 01 Dec 2024

https://github.com/iskandr/brainmets

Survival prediction for brain metastases

Last synced: 01 Dec 2024

https://github.com/iskandr/attention-in-neural-networks

Code for Miami ML meetup on Attention in Neural Networks

Last synced: 01 Dec 2024

https://github.com/iskandr/bytestar

Analyze Python bytecode using an SSA control flow graph representation

Last synced: 01 Dec 2024

https://github.com/iskandr/ml-experiments

Experiments with Jax, PyTorch and variable length sequence models

Last synced: 01 Dec 2024

https://github.com/iskandr/nnseq

Multi-sequence learning using recurrent neural networks

Last synced: 01 Dec 2024

https://github.com/iskandr/simple-somatic-variant-calling

A simple genomics "pipeline" implemented via shell scripts

Last synced: 01 Dec 2024

https://github.com/iskandr/immunesearch

Search for peptide substrings in IEDB T-cell assay data

Last synced: 01 Dec 2024

https://github.com/iskandr/vec

Simple vector expression language implemented in Python

Last synced: 01 Dec 2024

https://github.com/iskandr/interval

Conversion between genomic interval/coordinate systems

Last synced: 01 Dec 2024

https://github.com/iskandr/msmhc

Looking for "dark matter" of the MHC ligandome in mass specta

Last synced: 01 Dec 2024

https://github.com/iskandr/bumpkin

Experiment in writing an OCaml web framework.

Last synced: 01 Dec 2024

https://github.com/iskandr/yoclo

You Only Command Line Once

Last synced: 01 Dec 2024

https://github.com/iskandr/prototype-pan-allele-class2

Prototype of a pan-allele Class II MHC binding predictor

Last synced: 01 Dec 2024

https://github.com/iskandr/loopy_conv

GPU Convolution Kernels in Python using Loopy

Last synced: 01 Dec 2024

https://github.com/iskandr/mri_biopsy

Predict presence of prostate cancer from pre-biopsy MRI images

Last synced: 01 Dec 2024

https://github.com/iskandr/mr-python-variant-caller

Simple somatic variant caller in Python w/ Hadoop Streaming

Last synced: 01 Dec 2024

https://github.com/iskandr/insert-aligner

k-mer aligner to detect where a transposon was inserted in a longer sequence

Last synced: 01 Dec 2024

https://github.com/iskandr/honeycomb

Last synced: 01 Dec 2024

https://github.com/iskandr/cohort-seq2hla

Run the TRON seq2HLA script on a collection of related RNA samples

Last synced: 01 Dec 2024

https://github.com/iskandr/lettersfromkiev.com

Aron Zakon's 1941 Letters from Kiev

Last synced: 01 Dec 2024

https://github.com/iskandr/avroglob

Bundle together the contents of a directory into a single AVRO file

Last synced: 01 Dec 2024

https://github.com/iskandr/scalarmix

Vectorized implementation of scalar two component gaussian mixture models

Last synced: 01 Dec 2024

https://github.com/iskandr/tinytimer

Tiny benchmarking library for Python

Last synced: 01 Dec 2024

https://github.com/iskandr/weave

Experiments with digital fiber arts

Last synced: 01 Dec 2024

https://github.com/iskandr/vaxrank-application-note-2017

Draft of a Bioinformatics Application Note for Vaxrank

Last synced: 01 Dec 2024

https://github.com/iskandr/bioseq

Compact library for working with biological sequences (DNA, RNA, and Proteins)

Last synced: 01 Dec 2024

https://github.com/iskandr/ndtypes

Types for describing n-dimensional arrays and index expressions

Last synced: 01 Dec 2024

https://github.com/iskandr/ncov2019

Last synced: 01 Dec 2024

https://github.com/iskandr/liguus

Experiments in accretive rendering

Last synced: 01 Dec 2024

https://github.com/iskandr/sam-perf-experiments

Simple performance test of SAM parsing performance in Python

Last synced: 01 Dec 2024

https://github.com/iskandr/trialsearch

Learning solr, making a simple clinical trial search

Last synced: 01 Dec 2024

https://github.com/iskandr/bbn963-transcriptome

Analysis of BBN963 PacBio Iso-Seq

Last synced: 01 Dec 2024

https://github.com/iskandr/elmiat

Electronic Lady Macbeth In A Tree

Last synced: 01 Dec 2024

https://github.com/iskandr/pepsearch

Search reference proteomes for short peptides

Last synced: 01 Dec 2024

https://github.com/iskandr/randopep

Random peptide generation

Last synced: 01 Dec 2024

https://github.com/iskandr/example-repo

Globular grammigrams

Last synced: 01 Dec 2024

https://github.com/iskandr/mhcseqs

Sequence of MHCs across species

Last synced: 01 Dec 2024

https://github.com/iskandr/ensembl

Interface to ensembl's human genome annotations

Last synced: 01 Dec 2024

https://github.com/iskandr/mhc_ligandome

MHC binding predictions for human proteome

Last synced: 01 Dec 2024

https://github.com/iskandr/blitzy

A friendly layer atop Loopy for generating OpenCL kernels in Python

Last synced: 01 Dec 2024