Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by jdblischak
A curated list of projects in awesome lists by jdblischak .
https://github.com/jdblischak/smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config
bioinformatics slurm snakemake snakemake-profile
Last synced: 22 Dec 2024
https://github.com/jdblischak/singlecellseq
Batch effects and the effective design of single-cell gene expression studies
Last synced: 07 Nov 2024
https://github.com/jdblischak/r-project-workflows
List of workflow tools for R projects
Last synced: 02 Dec 2024
https://github.com/jdblischak/git-for-science
A quick introduction to version control with Git and GitHub
Last synced: 02 Dec 2024
https://github.com/jdblischak/reproducible-research-ctv
**Archived** CRAN Task View: Reproducible Research
cran r reproducibility reproducible-research rstats task-view
Last synced: 04 Dec 2024
https://github.com/jdblischak/singlecell-qtl
Discovery and characterization of variance QTLs in human induced pluripotent stem cells
Last synced: 14 Oct 2024
https://github.com/jdblischak/faviconPlease
Find URL for a website's favicon
favicon-grabber favicons rstats
Last synced: 04 Dec 2024
https://github.com/jdblischak/faviconplease
Find URL for a website's favicon
favicon-grabber favicons rstats
Last synced: 14 Oct 2024
https://github.com/jdblischak/fucci-seq
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
Last synced: 14 Oct 2024
https://github.com/jdblischak/giladlab-midway-guide
Guide to using RCC Midway
Last synced: 02 Dec 2024
https://github.com/jdblischak/repdoc
Package for testing workflowr features
Last synced: 02 Dec 2024
https://github.com/jdblischak/tb-suscept
Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells
Last synced: 02 Dec 2024
https://github.com/jdblischak/filter_probes
Filter Illumina HT-12 v4 probes for presence of HapMap CEU SNPs
Last synced: 02 Dec 2024
https://github.com/jdblischak/2016-09-14-intror
Website for 2016 UChicago BSD Introduction to R Workshop
Last synced: 02 Dec 2024
https://github.com/jdblischak/midway-subread-pipeline
Process RNA-seq data with Subread on RCC Midway
Last synced: 02 Dec 2024
https://github.com/jdblischak/jdb-conda
Scripts, recipes, and docs for maintaining Conda packages
Last synced: 02 Dec 2024
https://github.com/jdblischak/r-intermediate-altmetrics
A 2-day workshop on intermediate-level programming with R
Last synced: 02 Dec 2024
https://github.com/jdblischak/2016-09-15-chicago
Website for 2016 Software Carpentry workshop for UChicago BSD
Last synced: 02 Dec 2024
https://github.com/jdblischak/2014-09-18-chicago
Software Carpentry bootcamp at University of Chicago
Last synced: 02 Dec 2024
https://github.com/jdblischak/workflowr-demo01
An example site created with workflowr
Last synced: 02 Dec 2024
https://github.com/jdblischak/whereami
Visualize your current working directory
Last synced: 02 Dec 2024
https://github.com/jdblischak/swc-novice-r
Data files for teaching Software Carpentry novice R lessons
Last synced: 02 Dec 2024
https://github.com/jdblischak/open-sci-template
Template for creating project website. Facilitates open science. Powered by R, knitr, and pandoc.
Last synced: 02 Dec 2024
https://github.com/jdblischak/dc-bioc-limma
DataCamp: Differential expression analysis in R with limma
Last synced: 02 Dec 2024
https://github.com/jdblischak/r-reproducibility-challenge
Exercise on reproducible research with R
Last synced: 02 Dec 2024
https://github.com/jdblischak/test-actions-release
Can I trigger an Action on release?
Last synced: 02 Dec 2024
https://github.com/jdblischak/setup_vm
Installation scripts for virtual machine instances.
Last synced: 02 Dec 2024
https://github.com/jdblischak/test-issue-templates
Temporary repo to test GitHub Issue Templates
Last synced: 02 Dec 2024
https://github.com/jdblischak/stanford-stats352-reproducibility
Demonstration of reproducible workflows for Stanford STATS 352
Last synced: 02 Dec 2024
https://github.com/jdblischak/conflict-challenge
For challenge at 2015-04-17-nw workshop.
Last synced: 02 Dec 2024
https://github.com/jdblischak/bootcamp
Repository for PSU reproducibility bootcamp
Last synced: 02 Dec 2024
https://github.com/jdblischak/2013-10-03-pasteur
Instructional material for Software Carpentry boot camp at Institut Pasteur.
Last synced: 02 Dec 2024
https://github.com/jdblischak/2013-10-17-uic
Boot camp website and lesson materials for UIC on October 17-18, 2013.
Last synced: 02 Dec 2024
https://github.com/jdblischak/2013-09-19-chicago
Material for the Software Carpentry boot camp at the University of Chicago Sep. 19-20, 2013
Last synced: 02 Dec 2024
https://github.com/jdblischak/wflow-build-undefined-variable
Reproducible example of unexpected wflow_build behavior
Last synced: 02 Dec 2024
https://github.com/jdblischak/tiledb-scripts
Scripts to (semi-)automate recurring tasks
Last synced: 02 Dec 2024
https://github.com/jdblischak/wflow-datos-de-miercoles
Análisis #datosdemiercoles
Last synced: 02 Dec 2024
https://github.com/jdblischak/workflowr-spotify
Example repository from tutorial "Create and share reproducible code with R Markdown and workflowr"
Last synced: 02 Dec 2024
https://github.com/jdblischak/workflowr-demo-archive
workflowr demo of archiving functionality
Last synced: 02 Dec 2024
https://github.com/jdblischak/wflow-rs-cloud
https://rstudio.cloud/project/1350505
Last synced: 02 Dec 2024
https://github.com/jdblischak/2015-04-17-nw
Software Carpentry Workshop at Northwestern University
Last synced: 02 Dec 2024
https://github.com/jdblischak/wflow-darkly
A workflowr website using the Darkly theme
Last synced: 02 Dec 2024
https://github.com/jdblischak/tmpsite
Build R Markdown files in a temporary directory
Last synced: 02 Dec 2024
https://github.com/jdblischak/test-gha-event_name
Experimenting with `github.event_name`
Last synced: 02 Dec 2024
https://github.com/jdblischak/test-gha-issue
Open an Issue from GitHub Actions
Last synced: 02 Dec 2024
https://github.com/jdblischak/tiledb-nightlies-prototype
Prototype for centralized nightly CI builds for TileDB
Last synced: 02 Dec 2024
https://github.com/jdblischak/for-future-reference
My personal notes on miscellaneous technical topics.
Last synced: 02 Dec 2024