Projects in Awesome Lists by reactome
A curated list of projects in awesome lists by reactome .
https://github.com/reactome/reactome2py
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
enrichment pathway-analysis pypi python-client reactome-data-content visualization
Last synced: 11 Mar 2026
https://github.com/reactome/reactomegsa
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
Last synced: 20 Oct 2025
https://github.com/reactome/graph-core
Models the Reactome knowledgebase into a interconnected graph
Last synced: 11 Mar 2026
https://github.com/reactome/content-service
The new Reactome REST API to access the data
Last synced: 11 Mar 2026
https://github.com/reactome/pwp-browser
A tool for visualising and interacting with pathways data
Last synced: 11 Mar 2026
https://github.com/reactome/graph-importer
Converts the Reactome knowledgebase into a interconnected graph
Last synced: 11 Mar 2026
https://github.com/reactome/pwp-diagram
GWT widget to visualise Reactome pathways
Last synced: 11 Mar 2026
https://github.com/reactome/interaction-exporter
Exports molecular interactions inferred from Reactome content
Last synced: 11 Mar 2026
https://github.com/reactome/analysis-core
Pathway enrichment and expression analysis as well as species comparison tool
Last synced: 11 Mar 2026
https://github.com/reactome/biomodels-mapper
Mapping BioModels to Reactome using analysis results
Last synced: 11 Mar 2026
https://github.com/reactome/release-qa
A collection of tools to perform QA checks during the Release process.
Last synced: 11 Mar 2026
https://github.com/reactome/data-export
Creates the files to be placed in the download section
Last synced: 11 Mar 2026
https://github.com/reactome/diagram-converter
Generates a set of JSON files to be consumed by the Diagram Viewer
Last synced: 11 Mar 2026
https://github.com/reactome/release-go-update
Data-release-pipeline: Synchronization of gk_central GO instances with Gene Ontology (http://geneontology.org/)
data-release-pipeline mysql-release release
Last synced: 11 Mar 2026
https://github.com/reactome/diagram-exporter
Exporter of the diagram layout to different formats (pptx, svg, png, gif, jpg, sbgn)
Last synced: 11 Mar 2026
https://github.com/reactome/release-epmc-ncbi-exporter
Data-release-pipeline: Data exports for submission to NCBI, UCSC, and Europe PMC
data-release-pipeline exporter neo4j-release release
Last synced: 11 Mar 2026
https://github.com/reactome/release-update-dois
Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi attribute)
data-release-pipeline mysql-release release
Last synced: 11 Mar 2026
https://github.com/reactome/statistics-generator
Cypher queries to generate automatically release statistics
Last synced: 11 Mar 2026
https://github.com/reactome/pwp-model
Data model shared accross the widgets and browser
Last synced: 11 Mar 2026
https://github.com/reactome/graph-qa
Used to report possible data inconsistencies
Last synced: 11 Mar 2026
https://github.com/reactome/release-update-stable-ids
Data-release-pipeline: Updates stable identifiers of manually curated instances
data-release-pipeline mysql-release release
Last synced: 11 Mar 2026
https://github.com/reactome/pwp-quadtree
GWT basic implementation of a QuadTree
Last synced: 11 Mar 2026
https://github.com/reactome/release-orthoinference
Data-release-pipeline: Orthology projection of human reactions and pathways to non-human species
data-release-pipeline mysql-release release
Last synced: 11 Mar 2026
https://github.com/reactome/pwp-chebi
GWT widget to show molecules structure from ChEBI
Last synced: 11 Mar 2026
https://github.com/reactome/release-biomodels
Data-release-pipeline: Insertion of BioModels identifiers cross-references (data generated by https://github.com/reactome/biomodels-mapper) for Pathway instances
data-release-pipeline mysql-release release
Last synced: 11 Mar 2026
https://github.com/reactome/graph-add-links
This project is responsible for adding third-party reference database links to the Reactome graph database
Last synced: 11 Mar 2026
https://github.com/reactome/interaction-importer
This is for importing Intact data into the neo4j database
Last synced: 11 Mar 2026
https://github.com/reactome/release-cosmic-update
Code for updating COSMIC identifiers.
cosmic data-release-pipeline pre-slice
Last synced: 11 Mar 2026
https://github.com/reactome/release-common-lib
Data-release-pipeline: Common code for Reactome data-release-pipeline steps
data-release-pipeline mysql-release release
Last synced: 14 Jan 2026
https://github.com/reactome/release-jenkins-utils
Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release
Last synced: 11 Mar 2026
https://github.com/reactome/doi-suggester
Suggests which entities might need a DOI
Last synced: 11 Mar 2026
https://github.com/reactome/release_gocam
This pipeline generates go-cam ttl files from biopax and validates them
Last synced: 11 Mar 2026
https://github.com/reactome/server-java-utils
Server side utilities shared across different projects
Last synced: 11 Mar 2026
https://github.com/reactome/release-orthopairs
Data-release-pipeline: Retrieval of homology data (human to other species) from PANTHER (http://www.pantherdb.org/)
Last synced: 11 Mar 2026
https://github.com/reactome/release-chebi-update
Data-release-pipeline: Synchronization of gk_central Reference Molecule instances with ChEBI (https://www.ebi.ac.uk/chebi/)
data-release-pipeline mysql-release release
Last synced: 11 Mar 2026
https://github.com/reactome/pwp-infinite-scroller
Lists infinite scroll capability
Last synced: 11 Mar 2026
https://github.com/reactome/pwp-pdbe
GWT widget to show molecules structure from pdbe
Last synced: 11 Mar 2026
https://github.com/reactome/reactome_galaxy
This is for running the analysis service
Last synced: 11 Mar 2026