Projects in Awesome Lists by se7en69
A curated list of projects in awesome lists by se7en69 .
https://github.com/se7en69/python-course
Hosting the source code of my Python course on GitHub
Last synced: 11 Apr 2025
https://github.com/se7en69/bioinformatics-data-analysis
This repository contains the course materials for the "Bioinformatics Data Analysis from Scratch" course, which covers the fundamentals of bioinformatics programming using Python, R, and Linux. The course is designed for beginners with no prior experience in bioinformatics, providing a comprehensive introduction to biological programming.
Last synced: 18 Mar 2025
https://github.com/se7en69/bioinformatics-gui-suite
Bioinformatics GUI Suite: Python Tkinter tools for alignment, variant calling, phylogenetic analysis, and genome annotations. Simplify bioinformatics tasks with user-friendly interfaces, offering both code and executable files for efficient data analysis.
bioinformatics bioinformatics-tool developer-tools gui python tkinter tkinter-graphic-interface tkinter-gui tool
Last synced: 18 Mar 2025
https://github.com/se7en69/ar01-bioarrayexplorer
Microarray Dataset Analysis App offers metadata exploration, counts data analysis, differential expression analysis, and gene set enrichment analysis, providing a user-friendly interface and downloadable results for convenient analysis and sharing.
Last synced: 18 Mar 2025
https://github.com/se7en69/bioinformatics-practical-bootcamp-
This GitHub repository contains all the metadata, codes, and pipelines used in the 'Complete Bioinformatics Practical Bootcamp from Zero to Hero' course.
bioinformatics computational-biology python r rna-seq
Last synced: 18 Mar 2025
https://github.com/se7en69/bio-wrangler
Bio-Wrangler is a Python package for bioinformatics data wrangling. It helps load, filter, merge, and summarize bioinformatics datasets from formats like FASTA, FASTQ, VCF, and GFF.
bio-wrangler bioinformatics development fasta fastq gff python pythonpackage vcf wrangler
Last synced: 11 Apr 2025
https://github.com/se7en69/rna-seq-data-processing-and-analysis-pipeline
This pipeline automates essential steps for RNA-Seq data analysis, including quality control, read trimming, alignment to a reference genome, and coverage quantification. It leverages tools like FastQC, fastp, STAR, and bedtools to ensure high-quality results, with MultiQC reports providing an overview at each stage.
bioinformaitcs-scripting bioinformatics bioinformatics-pipeline data-analysis linux scripts shell
Last synced: 05 Apr 2025
https://github.com/se7en69/bash-for-bioinformatics-
Hosting the Bash Files used in the course.
Last synced: 18 Mar 2025
https://github.com/se7en69/gene-expression-rna-seq-pipeline-
The Pipeline is Designed to easily analyze the Raw data from sequencing Machines just use the pipeline code for quality checking to counting features
Last synced: 18 Mar 2025
https://github.com/se7en69/microarray-course
Hosting the source code of my microarray course on GitHub
Last synced: 18 Mar 2025
https://github.com/se7en69/github-course
Hosting the Github Course Files from my Course
Last synced: 18 Mar 2025
https://github.com/se7en69/heatmap-visulization-in-r
heatmap function in R Language is used to plot a heatmap. Heatmap is defined as a graphical representation of data using colors to visualize the value of the matrix.
Last synced: 18 Mar 2025
https://github.com/se7en69/principal-component-analysis-pca-
Principal component analysis (PCA) is a technique for reducing the dimensionality of such datasets, increasing interpretability but at the same time minimizing information loss. It does so by creating new uncorrelated variables that successively maximize variance. Script of R to analyze the data of PCA.
Last synced: 18 Mar 2025
https://github.com/se7en69/sra-fetch-convert
Welcome to **SRA Fetch & Convert**, a powerful tool to download and convert SRA data into FASTQ format effortlessly. Simply provide the SRA accession numbers, and let the tool handle the rest!
Last synced: 25 Feb 2025
https://github.com/se7en69/proteinscape
ProteinScape is an interactive web-based tool that leverages the ESMFold API to predict and visualize the 3D structures of proteins from their amino acid sequences. Designed for researchers, educators, and students, ProteinScape provides an intuitive platform to explore protein structures and their associated features.
bioinformatics prediction protein-structure streamlit-webapp webapplication
Last synced: 24 Mar 2025