Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by weinstockj
A curated list of projects in awesome lists by weinstockj .
https://github.com/weinstockj/telomere-length-pipeline
A cloud-based pipeline to estimate telomere lengths from WGS data using Telseq
Last synced: 14 Nov 2024
https://github.com/weinstockj/recommend
recommender system project for Machine Learning 574
Last synced: 14 Nov 2024
https://github.com/weinstockj/char_rnn_experiment
A fork of https://github.com/sherjilozair/char-rnn-tensorflow
Last synced: 14 Nov 2024
https://github.com/weinstockj/pileup_region
A simple rust application to count alt reads in a specified list of positions.
Last synced: 14 Nov 2024
https://github.com/weinstockj/julia-epacts
A prototype for using Julia to run association tests against a VCF
Last synced: 14 Nov 2024
https://github.com/weinstockj/pacer_analyses
Analyses supporting the TCL1A PACER manuscript (Weinstock* & Gopakumar*, et al., Nature 2023)
Last synced: 14 Nov 2024
https://github.com/weinstockj/hsc_simulation
A simulation of clonal hematopoiesis implemented in Julia
Last synced: 14 Nov 2024
https://github.com/weinstockj/gssg_snakemake
A fork of the GSSG repo which includes a Snakemake pipline
Last synced: 14 Nov 2024
https://github.com/weinstockj/bcftools_docker_build
This repo includes a Dockerfile to build a bcftools docker image
Last synced: 14 Nov 2024
https://github.com/weinstockj/duckdb_docker
Docker image for running duckdb
Last synced: 14 Nov 2024
https://github.com/weinstockj/covid19-labwas
R package supporting the Michigan Medicine COVID19-LabWAS manuscript
Last synced: 14 Nov 2024
https://github.com/weinstockj/config
This repo is for storage of various system configuration files and setup files
Last synced: 14 Nov 2024
https://github.com/weinstockj/bcf_info_tag_counter
A simple Rust application that sums the genotypes across variants and samples when a given info tag is present
Last synced: 14 Nov 2024
https://github.com/weinstockj/alpha_satellite_counter
A simple tool to estimate the length of alpha satellite DNA from WGS data
Last synced: 14 Nov 2024
https://github.com/weinstockj/gwassim
Code for an R package to simulate GWAS data and implements gene-based tests
Last synced: 14 Nov 2024
https://github.com/weinstockj/tensorflow_installation
Build tensorflow from source on CPUs that don't support AVX instructions
Last synced: 14 Nov 2024
https://github.com/weinstockj/topmed_finemapping
Finemap TOPMed GWAS summary stats using SUSIE
Last synced: 14 Nov 2024
https://github.com/weinstockj/somatic_was_analyses
An application of the somaticWas R package
Last synced: 14 Nov 2024
https://github.com/weinstockj/filter_somatic_variants_gwas_topmed
A collection of Go scripts to create a database of potential somatic artifacts in the TOPMed germline calls.
bioinformatics golang gwas-summary-statistics
Last synced: 14 Nov 2024
https://github.com/weinstockj/topmed-rnaseq-identity-checking
Sample identity checking for TOPMed RNA-seq data
Last synced: 14 Nov 2024
https://github.com/weinstockj/rvtest_wrapper
A toy wrapper to rvtest that generates Makefiles for parallel execution
Last synced: 14 Nov 2024
https://github.com/weinstockj/passenger_count_variant_calling
Count passenger mutations from WGS
Last synced: 14 Nov 2024
https://github.com/weinstockj/htslibr
An R package that bundles htslib and provides some additional utilities
bioinformatics r r-package rcpp
Last synced: 14 Nov 2024
https://github.com/weinstockj/recurrent_somatic_variants
An R package for analyzing somatic variation in TOPMed. Used in Weinstock et al., Science Advances, 2023
Last synced: 14 Nov 2024
https://github.com/weinstockj/llcb
Contains the LLCB method from Weinstock* and Arce* et al., 2023
causal-inference julia-language
Last synced: 21 Nov 2024