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awesome-bio-go
A curated list of Bioinformatics software written in the Go language.
https://github.com/dissipative/awesome-bio-go
Last synced: 1 day ago
JSON representation
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Workflow and Pipeline Management
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Sequence Analysis and Manipulation
- [paper
- SeqKit - platform and ultrafast toolkit for FASTA/Q file manipulation.
- KMCP - scale sequence/genome
- [paper
- bio - performance bioinformatics package in Golang.
- unikmer - mers with taxonomic information.
- bwt - Wheeler Transform and FM-index in Golang.
- gTaxon - platform NCBI taxonomy data querying tool with
- Gotranseq
- spexs2
- [paper
- [paper
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Variant Analysis and Manipulation
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Data Manipulation and Querying
- bget - line tool to query bioinformatics APIs, data,
- taxonkit
- countminsketch - Min Sketch in Golang.
- csvtk - platform, efficient, and practical CSV/TSV toolkit in Golang.
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General Bioinformatics Libraries
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Proteomics and Genomics Analysis
- Philosopher
- samql - like query language for the SAM/BAM file format.
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DICOM Parsing
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Name and Taxonomy Analysis
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Biochemistry
Programming Languages
Categories
Sub Categories
Keywords
bioinformatics
17
golang
11
go
4
genomics
4
taxonomy
3
cross-platform
3
coverage
2
taxdump
2
lca
2
data-science
2
structural-variation
2
bioinformatics-pipeline
2
sequence
2
scaled-minhash
2
tool
2
toolkit
2
kmer
2
gtf
1
data-analysis
1
mass-spectrometry
1
ms-data
1
bigsi
1
proteomics
1
bam
1
sam
1
sequencing
1
sql
1
manipulation
1
fasta
1
fastq
1
cheminformatics
1
dataflow
1
fbp
1
pipeline
1
scientific-workflows
1
scipipe
1
workflow
1
workflow-engine
1
analysis-pipeline
1
aws
1
cloud-computing
1
language
1
runtime
1
scientific-computing
1
bam-files
1
bigwig
1
bigwig-files
1
bioinformatics-containers
1
chip-seq
1
genomic-ranges
1