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awesome-atac-analysis

Links to ATAC-seq analysis tools
https://github.com/databio/awesome-atac-analysis

Last synced: about 11 hours ago
JSON representation

Programming Languages
Python 9 R 7 Shell 4 HTML 3 C++ 3 MATLAB 2 Java 1 C 1 Nextflow 1 Jupyter Notebook 1
Categories
Motif enrichment/TF footprinting/TFBS 53 Nucleosome positioning 42 Single-cell 23 Raw data processing pipelines 16 Peak callers 6 Region enrichment 4 QC 3 Differential accessibility 1
Sub Categories
Keywords
atac-seq 10 single-cell 3 sequencing 2 bioinformatics-pipeline 2 chromatin-accessibiity 2 pipeline 2 single-cell-atac-seq 2 snakemake 2 r 2 dnase-seq 2 bioinformatics 2 epigenetics 2 scatac 1 genomics 1 epigenomics 1 bead-doublets 1 visualization 1 pipelines 1 comparative-regulatory-analysis 1 tool 1 scatac-seq 1 scrna-seq 1 software 1 machine-learning-algorithms 1 quality-control 1 transcription-factor-binding 1 statistical-tests 1 footprinting 1 bioconductor 1 peak-detection 1 peak-caller 1 machine-learning 1 workflows 1 sra 1 rna-seq 1 reproducible-research 1 ngs 1 fastq 1 chip-seq 1 workflow 1 nf-core 1 nextflow 1 bulk-atac-seq 1 qc 1 macs2 1 atacseqqc 1 single-cell-analysis 1