awesome-bio-go
A curated list of Bioinformatics software written in the Go language.
https://github.com/dissipative/awesome-bio-go
Last synced: 13 days ago
JSON representation
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Biochemistry
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Data Manipulation and Querying
- bget - line tool to query bioinformatics APIs, data,
- taxonkit
- countminsketch - Min Sketch in Golang.
- csvtk - platform, efficient, and practical CSV/TSV toolkit in Golang.
- [Shen and Ren, 2021
- bget - line tool to query bioinformatics APIs, data,
- [Shen et al., 2023
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DICOM Parsing
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General Bioinformatics Libraries
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Name and Taxonomy Analysis
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Phylogenetics and Alignments
- gotree - line tools and API to manipulate phylogenetic trees.
- [Lemoine and Gascuel, 2021
- goalign - line tools and API to manipulate multiple sequence
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Proteomics and Genomics Analysis
- Philosopher
- samql - like query language for the SAM/BAM file format.
- [da Veiga Leprevost et al., 2020
- [Lee and Maragkakis, 2021
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Sequence Analysis and Manipulation
- [paper
- [paper
- [paper
- SeqKit - platform and ultrafast toolkit for FASTA/Q file manipulation.
- KMCP - scale sequence/genome
- bio - performance bioinformatics package in Golang.
- unikmer - mers with taxonomic information.
- bwt - Wheeler Transform and FM-index in Golang.
- gTaxon - platform NCBI taxonomy query tool with CLI and REST API;
- Gotranseq
- spexs2
- [paper
- [paper
- [Shen et al., 2022
- [Shen et al., 2016
- gofasta - line utilities for genomic epidemiology.
- [Jackson, 2022
- [Rahni et al., 2022
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Variant Analysis and Manipulation
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Workflow and Pipeline Management
Programming Languages
Categories
Sequence Analysis and Manipulation
18
Variant Analysis and Manipulation
8
Data Manipulation and Querying
7
General Bioinformatics Libraries
6
Proteomics and Genomics Analysis
4
Workflow and Pipeline Management
4
Phylogenetics and Alignments
3
Biochemistry
2
Name and Taxonomy Analysis
2
DICOM Parsing
2
License
1
Sub Categories
Keywords
bioinformatics
18
golang
12
go
5
genomics
4
cross-platform
3
taxonomy
3
tool
2
scaled-minhash
2
toolkit
2
kmer
2
lca
2
data-science
2
dicom
2
sequence
2
medical-imaging
2
structural-variation
2
coverage
2
taxdump
2
golang-library
2
bioinformatics-pipeline
2
pacs
1
parser
1
medical-image-analysis
1
medical
1
imaging
1
real-time
1
streaming
1
bam-files
1
bigwig
1
bigwig-files
1
bioinformatics-containers
1
chip-seq
1
genomic-ranges
1
gtf
1
data-analysis
1
mass-spectrometry
1
cheminformatics
1
dataflow
1
fbp
1
pipeline
1
scientific-workflows
1
scipipe
1
workflow
1
workflow-engine
1
analysis-pipeline
1
aws
1
cloud-computing
1
language
1
runtime
1
scientific-computing
1