Projects in Awesome Lists tagged with biosimulators
A curated list of projects in awesome lists tagged with biosimulators .
https://github.com/ebi-biomodels/sbo
The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling.
biosimulators computational-biology mathematical-modeling numerical-simulation obofoundry ontology sbml systems-biology
Last synced: 25 Apr 2026
https://github.com/EBI-BioModels/SBO
The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling.
biosimulators computational-biology mathematical-modeling numerical-simulation obofoundry ontology sbml systems-biology
Last synced: 11 Mar 2025
https://github.com/biosimulators/biosimulators_simulator_template
Template for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program
biosimulators combine-archive computational-biology docker mathematical-modelling omex-metadata python sed-ml simulation simulator systems-biology
Last synced: 12 Feb 2026
https://github.com/biosimulators/biosimulators_copasi
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biochemical-networks biosimulators combine-archive computational-biology copasi docker dynamical-modeling omex-metadata python sbml sed-ml simulation systems-biology
Last synced: 14 Jan 2026
https://github.com/biosimulators/biosimulators_tutorials
Tutorials for BioSimulators
biosimulations biosimulators combine computational-biology jupyter mathematical-modeling numerical-simulation omex sbml sed-ml systems-biology tutorial
Last synced: 12 Feb 2026
https://github.com/biosimulations/biosimulations-bigg
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
bigg biosimulations biosimulators cell-biology combine computational-biology fba flux-balance-analysis metabolism omex sbml sed-ml systems-biology
Last synced: 05 Apr 2026
https://github.com/biosimulators/biosimulators.github.io
Summary of the technical documentation for BioSimulators
biosimulators combine computational-biology modeling omex sbml sed-ml simulation systems-biology
Last synced: 12 Feb 2026