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Projects in Awesome Lists tagged with metabolism

A curated list of projects in awesome lists tagged with metabolism .

https://github.com/biosustain/shu

Multi-dimensional, trans-omics metabolic maps.

metabolism systems-biology visualization

Last synced: 26 Sep 2024

https://github.com/robaina/netflowpy

A python tool to optimize chemical concentration trajectories in network-based chemical systems

alternative-optima bioinformatics chemical-networks chemistry computational-biology dynamical-systems linear-programming metabolic-networks metabolism optimization python

Last synced: 04 Nov 2024

https://github.com/carrascomj/kair

COnstraint-Based Reconstruction and Analysis in Rust

cobra metabolism modeling simulation systems-biology

Last synced: 05 Nov 2024

https://github.com/earmingol/sccellfie

scCellFie, inspired by the MATLAB-based CellFie tool, offers advanced analysis of metabolic functions on Python using single-cell and spatial transcriptomics. Efficient and user-friendly, it integrates with Scanpy to extend CellFie's capabilities, enabling in-depth single-cell and spatial metabolic task analysis.

metabolic-modeling metabolic-pathways metabolism single-cell single-cell-transcriptomics spatial-transcriptomics systems-biology

Last synced: 14 Oct 2024