Ecosyste.ms: Awesome

https://github.com/namin/biohacker

debugging biological networks to reach coherence, completeness and consistency

ai common-lisp expert-system metabolic-network ncats-translator reasoning truth-maintenance

Last synced: 06 Nov 2024

https://github.com/sysbiochalmers/yarrowia_lipolytica_w29-gem

Genome-scale model of Yarrowia lipolytica.

constraint-based-modeling genome-scale-models metabolic-engineering metabolic-models metabolic-network metabolic-reconstruction omics-data-integration stoichiometric-reactions systems-biology yarrowia-lipolytica

Last synced: 03 Dec 2024

https://github.com/barupal/metamapp

R codes for creating metamapp graphs and files

bioinformatics metabolic-network metabolomics

Last synced: 17 Nov 2024

https://github.com/htpusa/moomin

MOOMIN is a tool for analysing differential expression data

constraint-based-modeling differential-expression gene-expression matlab metabolic-network moomin

Last synced: 02 Dec 2024

https://github.com/earmingol/cobra_utils

Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.

biochemistry bioinformatics cobra cobrapy computational-biology metabolic-models metabolic-network metabolic-reconstruction modeling modeling-tool python systems-biology

Last synced: 02 Dec 2024

https://github.com/cfrioux/fluto

answer-set-programming bioinformatics flux-balance-analysis gap-filling linear-programming metabolic-models metabolic-network metabolic-reconstruction

Last synced: 10 Nov 2024

https://github.com/lcsb-biocore/cufluxsampler.jl

GPU-accelerated algorithms for flux sampling in CUDA.jl

cobra cuda gpu julia metabolic-network metabolism sampling

Last synced: 02 Dec 2024

https://github.com/gauravcodepro/streamlit-bigg-metabolic-analyzer-api

streamlit application to analyze the BIGG Metabolic models.

metabolic-models metabolic-network streamlit-application streamlit-webapp

Last synced: 09 Nov 2024

https://github.com/cfrioux/deadend_detector

Detection of deadends in metabolic networks

answer-set-programming bioinformatics metabolic-network systems-biology

Last synced: 10 Nov 2024

https://github.com/arnaudbelcour/rhea_mapper

[Not maintained and not updated] Draft metabolic network reconstruction using Rhea database, Uniprot and SPARQL queries.

metabolic-network sparql-query

Last synced: 10 Nov 2024

https://github.com/duartebred/mapping-omics-datasets-on-kegg-metabolic-pathways

Repository for the presentation of work developed by the student Duarte Velho for the UC Project, of the Master in Bioinformatics of the University of Minho, academic year 23-24.

bioinformatics-tool kegg-pathway metabolic-network metabolic-pathways-mapping metagenomics

Last synced: 22 Dec 2024