https://github.com/sysbiochalmers/raven

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

constraint-based-modeling gap-filling genome-scale-models human-metabolism metabolic-engineering metabolic-models metabolic-reconstruction sysbio systems-biology

Last synced: 04 Apr 2025

https://github.com/christianlieven/memote-m-capsulatus

Genome-scale metabolic model of Methylococcus capsulatus.

c1 constraint-based-modeling genome-scale-models metabolic-models metabolic-reconstruction metabolism methanotrophy methylococcus systems-biology

Last synced: 04 Mar 2025

https://github.com/sysbiochalmers/yarrowia_lipolytica_w29-gem

Genome-scale model of Yarrowia lipolytica.

constraint-based-modeling genome-scale-models metabolic-engineering metabolic-models metabolic-network metabolic-reconstruction omics-data-integration stoichiometric-reactions systems-biology yarrowia-lipolytica

Last synced: 03 Dec 2024

https://github.com/metexplore/dexom

Diversity-based enumeration of optimal context-specific metabolic networks

cobra-toolbox constraint-based-modeling metabolic-engineering metabolic-network metabolic-pathways metabolic-reconstruction metabolism omics-data-integration optimization

Last synced: 31 Jan 2025

https://github.com/earmingol/cobra_utils

Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.

biochemistry bioinformatics cobra cobrapy computational-biology metabolic-models metabolic-network metabolic-reconstruction modeling modeling-tool python systems-biology

Last synced: 24 Mar 2025

https://github.com/sysbiochalmers/rhto-gem

Genome-scale metabolic model of Rhodotorula toruloides

constraint-based-modeling genome-scale-models metabolic-engineering metabolic-reconstruction sysbio systems-biology yeast

Last synced: 26 Mar 2025

https://github.com/cfrioux/fluto

answer-set-programming bioinformatics flux-balance-analysis gap-filling linear-programming metabolic-models metabolic-network metabolic-reconstruction

Last synced: 24 Feb 2025

https://github.com/applicativesystem/metabolic-json

a metabolic json parser and streamlit for BIGG database

bioinformatics genome-analysis genome-bioinformatics genome-informatics json json-api json-data metabolic-models metabolic-pathways metabolic-reconstruction

Last synced: 16 Dec 2024

https://github.com/ibchgenomic/metabolic-json

a metabolic json parser and streamlit for BIGG database

bioinformatics genome-analysis genome-bioinformatics genome-informatics json json-api json-data metabolic-models metabolic-pathways metabolic-reconstruction

Last synced: 18 Mar 2025

https://github.com/gauravcodepro/streamlit-metabolic-json-modelling

streamlit application for metabolic json from BIGG modelling database.

metabolic-models metabolic-pathways metabolic-reconstruction streamlit-application streamlit-webapp

Last synced: 22 Feb 2025